C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434667 SCAF4-010 ENSG00000156304 9606 - 21:31671228-31731968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000434667
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000434667 5.709±0.00 6.978±0.00 6.258±0.00 4.702±0.00 3.331±2.16 2.839±0.00 3.441±1.56 1.122±0.57 6.205±0.00 2.741±0.00 4.790±2.29 4.695±1.57 14.269±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MH CIL_0000MH_0002 CGP 21:31659622-31732075
CIL_0003N0 CIL_0003N0_0001 CGP 21:31671033-32044633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039280 Scaf4-201 protein_coding Mus_musculus 0 2905
ENSMUST00000163419 Scaf4-202 protein_coding Mus_musculus 0 1378

Loading