C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11 family interacting protein 1 (class I)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156675 RAB11FIP1 9606 - 8:37858618-37899467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287263 RAB11FIP1-001 37858618-37899467 protein_coding
  ENST00000330843 RAB11FIP1-002 37858949-37899454 protein_coding
  ENST00000522727 RAB11FIP1-008 37862759-37899454 protein_coding
  ENST00000522774 RAB11FIP1-007 37862895-37873278 retained_intron
  ENST00000523182 RAB11FIP1-003 37862895-37873278 processed_transcript
  ENST00000524118 RAB11FIP1-006 37870387-37878117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000287263ENST00000330843ENST00000522727ENST00000522774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000287263 0.599±0.00 N/A 1.204±0.00 0.107±0.00 N/A 1.452±0.00 0.472±0.00 0.509±0.00 0.392±0.20 0.196±0.00 4.000±2.51 2.979±2.07 1.168±0.00
ENST00000330843 0.782±0.00 2.378±0.00 N/A 0.147±0.04 1.251±0.26 1.909±0.94 0.719±0.52 1.164±0.80 1.008±0.00 N/A 4.370±2.65 2.399±0.11 0.887±0.00
ENST00000522727 2.339±0.00 N/A N/A 0.838±0.00 1.935±0.00 9.256±0.00 1.132±0.00 N/A 2.076±1.15 1.072±0.00 8.396±4.67 5.932±0.12 N/A
ENST00000522774 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.751±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0001 VISTA 8:37337791-37938686
CIL_0009C5 CIL_0009C5_0001 VISTA 8:37525567-38127835
CIL_0007QT CIL_0007QT_0001 VISTA 8:37525572-38127829
CIL_0003YX CIL_0003YX_0002 CGP 8:37843268-37899467
CIL_0002IQ CIL_0002IQ_0001 CGP 8:37858618-37940129

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036462 rab11fip1b RAB11 family interacting protein 1 (class I) b protein_coding Danio_rerio
ENSDARG00000046124 rab11fip1a RAB11 family interacting protein 1 (class I) a protein_coding Danio_rerio
ENSMUSG00000031488 Rab11fip1 RAB11 family interacting protein 1 (class I) protein_coding Mus_musculus

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