C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 1 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287263 RAB11FIP1-001 ENSG00000156675 9606 - 8:37858618-37899467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000287263
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000287263 0.599±0.00 1.204±0.00 0.107±0.00 1.452±0.00 0.472±0.00 0.509±0.00 0.392±0.20 0.196±0.00 4.000±2.51 2.979±2.07 1.168±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0001 VISTA 8:37337791-37938686
CIL_0009C5 CIL_0009C5_0001 VISTA 8:37525567-38127835
CIL_0007QT CIL_0007QT_0001 VISTA 8:37525572-38127829
CIL_0003YX CIL_0003YX_0002 CGP 8:37843268-37899467
CIL_0002IQ CIL_0002IQ_0001 CGP 8:37858618-37940129

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033878 Rab11fip1-201 protein_coding Mus_musculus 0 1650
ENSMUST00000054212 Rab11fip1-202 protein_coding Mus_musculus 0 1347

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