C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 1 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522727 RAB11FIP1-008 ENSG00000156675 9606 - 8:37862759-37899454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverMuscleOvaryPlacentaENST00000522727
Transcript ID Adipose Brain Breast Colon Heart Liver Muscle Ovary Placenta
ENST00000522727 2.339±0.00 0.838±0.00 1.935±0.00 9.256±0.00 1.132±0.00 2.076±1.15 1.072±0.00 8.396±4.67 5.932±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0001 VISTA 8:37337791-37938686
CIL_0009C5 CIL_0009C5_0001 VISTA 8:37525567-38127835
CIL_0007QT CIL_0007QT_0001 VISTA 8:37525572-38127829
CIL_0003YX CIL_0003YX_0002 CGP 8:37843268-37899467
CIL_0002IQ CIL_0002IQ_0001 CGP 8:37858618-37940129

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054212 Rab11fip1-202 protein_coding Mus_musculus 0 198
ENSMUST00000033878 Rab11fip1-201 protein_coding Mus_musculus 0 198

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