C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11 family interacting protein 1 (class I)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031488 Rab11fip1 10090 - 8:27138773-27174646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033878 Rab11fip1-201 27138773-27174646 protein_coding
  ENSMUST00000054212 Rab11fip1-202 27138773-27174646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033878ENSMUST00000054212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033878 0.612±0.47 1.636±0.39 3.908±0.11 0.147±0.04 1.256±0.54 11.824±1.28 0.166±0.06 2.307±0.33 0.854±0.34 11.539±0.72 0.029±0.02 2.056±0.95 2.175±1.03 1.419±0.61
ENSMUST00000054212 0.743±0.62 0.267±0.06 4.063±0.07 0.090±0.02 0.942±0.19 6.164±2.06 0.175±0.10 1.288±0.10 0.444±0.15 6.714±0.32 0.044±0.02 0.966±0.28 2.725±1.48 0.698±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000802 CIL_000802_0002 VISTA 8:26613996-27214881
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0003YX CIL_0003YX_0003 CGP 8:27123832-27174646
CIL_0002IQ CIL_0002IQ_0002 CGP 8:27138773-27202547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005768 IEA endosome
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036462 rab11fip1b RAB11 family interacting protein 1 (class I) b protein_coding Danio_rerio
ENSDARG00000046124 rab11fip1a RAB11 family interacting protein 1 (class I) a protein_coding Danio_rerio
ENSG00000156675 RAB11FIP1 RAB11 family interacting protein 1 (class I) protein_coding Homo_sapiens

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