C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 8 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033653 Vps8 10090 + 16:21423118-21644680 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000096191 Vps8-002 21423118-21579247 protein_coding
  ENSMUST00000096192 Vps8-201 21423118-21644680 protein_coding
  ENSMUST00000115397 Vps8-202 21423118-21644680 protein_coding
  ENSMUST00000117598 Vps8-011 21423201-21644672 protein_coding
  ENSMUST00000118138 Vps8-004 21508633-21644675 protein_coding
  ENSMUST00000118923 Vps8-001 21423169-21644680 protein_coding
  ENSMUST00000122235 Vps8-003 21423196-21546417 protein_coding
  ENSMUST00000125487 Vps8-009 21470187-21641572 protein_coding
  ENSMUST00000127903 Vps8-008 21627631-21644416 processed_transcript
  ENSMUST00000134650 Vps8-005 21527466-21533165 retained_intron
  ENSMUST00000139473 Vps8-010 21423272-21434973 protein_coding
  ENSMUST00000150765 Vps8-007 21568364-21581698 retained_intron
  ENSMUST00000156580 Vps8-006 21527536-21559423 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096192ENSMUST00000115397ENSMUST00000117598ENSMUST00000118138ENSMUST00000118923ENSMUST00000125487ENSMUST00000127903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096192 N/A 0.934±0.08 N/A N/A 0.964±0.00 0.767±0.00 N/A N/A N/A N/A N/A 1.870±0.00 N/A N/A
ENSMUST00000115397 2.187±0.33 1.723±0.00 0.977±0.39 1.664±0.18 1.061±0.63 N/A 0.585±0.08 1.138±0.36 0.603±0.13 1.029±0.14 0.696±0.25 1.456±0.35 1.206±0.06 0.511±0.20
ENSMUST00000117598 2.132±0.24 2.152±0.43 3.239±0.48 3.555±0.91 2.499±0.46 2.267±0.54 2.814±0.55 3.165±0.68 1.288±0.53 3.179±0.67 0.780±0.33 3.820±1.27 5.202±2.05 2.000±0.45
ENSMUST00000118138 N/A 3.742±1.25 1.464±0.00 N/A 4.102±0.00 1.885±0.22 1.227±0.00 3.392±0.58 0.590±0.11 N/A N/A 3.187±1.17 N/A N/A
ENSMUST00000118923 N/A N/A N/A 4.400±2.85 N/A N/A N/A N/A 0.364±0.00 N/A 0.429±0.00 N/A N/A N/A
ENSMUST00000125487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.471±0.00
ENSMUST00000127903 N/A 6.254±1.51 N/A N/A N/A 6.185±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YA CIL_0003YA_0003 CGP 16:21423118-21694665

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060477 vps8 vacuolar protein sorting 8 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000156931 VPS8 vacuolar protein sorting 8 homolog (S. cerevisiae) protein_coding Homo_sapiens

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