C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA pseudouridylate synthase domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156990 RPUSD3 9606 - 3:9837849-9844602 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000383820 RPUSD3-001 9837849-9844016 protein_coding
  ENST00000418713 RPUSD3-011 9839941-9844002 protein_coding
  ENST00000423108 RPUSD3-006 9837849-9840617 protein_coding
  ENST00000424438 RPUSD3-010 9838020-9843942 protein_coding
  ENST00000427174 RPUSD3-009 9838165-9843986 protein_coding
  ENST00000433535 RPUSD3-002 9837849-9844014 protein_coding
  ENST00000433555 RPUSD3-013 9841408-9843976 protein_coding
  ENST00000433972 RPUSD3-004 9841257-9844059 protein_coding
  ENST00000451405 RPUSD3-014 9841698-9843995 nonsense_mediated_decay
  ENST00000460909 RPUSD3-017 9843151-9844016 retained_intron
  ENST00000464783 RPUSD3-007 9837882-9840866 retained_intron
  ENST00000466141 RPUSD3-008 9837894-9839713 retained_intron
  ENST00000472381 RPUSD3-012 9840682-9844018 retained_intron
  ENST00000473522 RPUSD3-016 9841854-9843737 processed_transcript
  ENST00000475470 RPUSD3-005 9839901-9843571 retained_intron
  ENST00000484134 RPUSD3-003 9839901-9844016 retained_intron
  ENST00000485705 RPUSD3-015 9841736-9844602 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383820ENST00000418713ENST00000423108ENST00000427174ENST00000433535ENST00000433555ENST00000433972ENST00000451405ENST00000466141ENST00000472381ENST00000473522ENST00000475470ENST00000484134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383820 8.024±0.00 4.231±0.00 N/A 3.300±0.43 5.200±4.89 6.537±0.00 5.830±0.00 11.530±0.00 8.268±0.00 3.964±0.00 9.296±6.79 10.946±2.67 16.479±8.61 23.929±0.91
ENST00000418713 N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.988±0.00 2.045±0.00 N/A N/A
ENST00000427174 N/A N/A N/A 5.399±0.00 N/A N/A 0.409±0.00 N/A 1.410±0.00 N/A N/A N/A 3.400±0.00 N/A
ENST00000433535 N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A 4.419±0.00 0.304±0.00 12.023±0.00 N/A N/A N/A
ENST00000433555 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.862±0.54 N/A 4.854±0.00 N/A N/A
ENST00000433972 3.702±0.00 4.398±0.00 0.595±0.00 4.634±2.21 4.596±0.00 2.997±2.70 2.477±0.00 2.839±1.90 0.644±0.00 1.506±0.00 N/A 3.169±2.48 2.087±0.46 5.830±0.00
ENST00000451405 N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A 0.673±0.00 N/A N/A N/A N/A N/A
ENST00000466141 N/A 3.810±0.00 N/A N/A 0.350±0.00 0.531±0.00 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000472381 N/A N/A 1.044±0.00 N/A 0.778±0.00 1.800±0.00 N/A 1.352±0.00 N/A 0.393±0.00 N/A N/A N/A N/A
ENST00000473522 N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A 1.067±0.00 N/A N/A N/A N/A N/A
ENST00000475470 N/A N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484134 N/A N/A N/A N/A N/A 0.159±0.00 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WY CIL_0002WY_0001 CGP 3:9808086-9855138
CIL_00059D CIL_00059D_0001 CGP 3:9837849-9880254

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000051169 Rpusd3 RNA pseudouridylate synthase domain containing 3 protein_coding Mus_musculus

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