C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA pseudouridylate synthase domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383820 RPUSD3-001 ENSG00000156990 9606 - 3:9837849-9844016 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383820
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383820 8.024±0.00 4.231±0.00 3.300±0.43 5.200±4.89 6.537±0.00 5.830±0.00 11.530±0.00 8.268±0.00 3.964±0.00 9.296±6.79 10.946±2.67 16.479±8.61 23.929±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WY CIL_0002WY_0001 CGP 3:9808086-9855138
CIL_00059D CIL_00059D_0001 CGP 3:9837849-9880254

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113092 Rpusd3-001 protein_coding Mus_musculus 0 730
ENSMUST00000060634 Rpusd3-002 protein_coding Mus_musculus 0 667
ENSMUST00000129047 Rpusd3-003 protein_coding Mus_musculus 0 579
ENSMUST00000147726 Rpusd3-005 protein_coding Mus_musculus 0 566
ENSMUST00000134853 Rpusd3-006 processed_transcript Mus_musculus 0 331
ENSMUST00000151618 Rpusd3-007 protein_coding Mus_musculus 0 226
ENSMUST00000124078 Rpusd3-009 retained_intron Mus_musculus 1e-37 161

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