C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA pseudouridylate synthase domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051169 Rpusd3 10090 - 6:113415319-113419348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060634 Rpusd3-002 113415329-113419319 protein_coding
  ENSMUST00000113092 Rpusd3-001 113415319-113419348 protein_coding
  ENSMUST00000124078 Rpusd3-009 113416789-113419319 retained_intron
  ENSMUST00000129047 Rpusd3-003 113416106-113419319 protein_coding
  ENSMUST00000129560 Rpusd3-008 113417223-113419331 protein_coding
  ENSMUST00000134853 Rpusd3-006 113417196-113419048 processed_transcript
  ENSMUST00000147726 Rpusd3-005 113416310-113419310 protein_coding
  ENSMUST00000150452 Rpusd3-004 113418304-113419323 retained_intron
  ENSMUST00000151618 Rpusd3-007 113416894-113419314 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060634ENSMUST00000113092ENSMUST00000124078ENSMUST00000129047ENSMUST00000134853ENSMUST00000147726ENSMUST00000150452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060634 3.614±1.59 2.058±0.49 1.273±0.07 1.493±0.51 2.729±0.55 3.641±0.57 1.625±0.48 6.770±1.29 2.942±1.49 1.806±0.00 1.657±0.72 2.380±0.89 3.180±1.88 1.175±0.00
ENSMUST00000113092 7.306±2.75 7.524±2.38 3.522±0.86 3.257±1.87 11.544±2.39 6.428±1.15 2.747±0.92 15.467±5.32 10.303±5.21 3.945±0.93 2.890±0.78 4.794±1.44 5.322±4.45 4.540±0.52
ENSMUST00000124078 N/A N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A N/A 2.135±0.51 N/A 0.659±0.00
ENSMUST00000129047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.978±0.77 N/A 1.861±0.14
ENSMUST00000134853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.327±0.00 N/A N/A
ENSMUST00000147726 N/A N/A N/A N/A 2.911±0.00 N/A N/A N/A N/A N/A N/A 4.397±0.00 1.175±0.00 N/A
ENSMUST00000150452 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.289±0.00 N/A 1.600±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WY CIL_0002WY_0002 CGP 6:113389260-113419348
CIL_00059D CIL_00059D_0002 CGP 6:113415319-113435760

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000156990 RPUSD3 RNA pseudouridylate synthase domain containing 3 protein_coding Homo_sapiens

Loading