C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 phosphatidylinositol 3-kinase-related kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565324 SMG1-005 ENSG00000157106 9606 - 16:18807760-18896874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000565324
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000565324 1.883±0.00 2.645±0.00 9.557±0.00 5.829±0.00 1.959±0.00 5.987±0.00 6.950±0.00 8.854±0.00 8.076±0.00 4.342±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0002 CGP 16:18791667-18926454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 14800
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 14670
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 1260
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 948
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 553
ENSMUST00000178025 Smg1-006 protein_coding Mus_musculus 0 368

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