C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 phosphatidylinositol 3-kinase-related kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446231 SMG1-001 ENSG00000157106 9606 - 16:18804853-18926454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000446231
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000446231 1.297±0.00 3.043±0.00 1.319±0.57 3.398±0.00 4.079±0.00 1.690±0.00 1.867±1.54 2.940±0.00 1.748±0.95 0.663±0.16 1.294±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0002 CGP 16:18791667-18926454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 TAS protein kinase activity
GO:0004674 NAS protein serine/threonine kinase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006281 IEA DNA repair
GO:0006406 TAS mRNA export from nucleus
GO:0006950 IDA response to stress
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0044822 IDA poly(A) RNA binding
GO:0046777 IDA protein autophosphorylation
GO:0046854 IDA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 15630
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 14670
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 2220
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 1476
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 1306
ENSMUST00000178025 Smg1-006 protein_coding Mus_musculus 0 368

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