C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SVOP-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157703 SVOPL 9606 - 7:138594285-138701352 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288513 SVOPL-001 138594285-138663152 protein_coding
  ENST00000419765 SVOPL-005 138594600-138679079 protein_coding
  ENST00000421622 SVOPL-004 138594285-138701352 protein_coding
  ENST00000436657 SVOPL-201 138594286-138664224 protein_coding
  ENST00000441685 SVOPL-002 138594285-138663571 nonsense_mediated_decay
  ENST00000463557 SVOPL-006 138594437-138627444 processed_transcript
  ENST00000478865 SVOPL-007 138594287-138626094 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000288513ENST00000419765ENST00000421622ENST00000436657ENST00000441685ENST00000463557ENST00000478865
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000288513 N/A N/A N/A 0.172±0.00 0.290±0.25 N/A N/A 0.369±0.13 0.154±0.09 0.343±0.00
ENST00000419765 0.064±0.00 N/A 0.238±0.19 0.544±0.00 N/A 0.232±0.00 0.387±0.00 0.162±0.00 0.334±0.20 N/A
ENST00000421622 N/A 0.786±0.00 N/A N/A 0.440±0.00 N/A 0.281±0.00 N/A N/A N/A
ENST00000436657 N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 0.261±0.00 N/A
ENST00000441685 N/A 0.071±0.00 N/A N/A 0.023±0.02 N/A N/A 0.012±0.00 N/A 0.172±0.14
ENST00000463557 N/A N/A N/A N/A N/A 0.327±0.00 N/A N/A 0.358±0.19 N/A
ENST00000478865 N/A N/A N/A N/A 0.039±0.00 N/A N/A 0.118±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0001 CGP 7:138460334-138701352
CIL_0002QA CIL_0002QA_0001 CGP 7:138594285-138799560

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057983 svopl SVOP-like protein_coding Danio_rerio
ENSMUSG00000029830 Svopl SV2 related protein homolog (rat)-like protein_coding Mus_musculus

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