C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SV2 related protein homolog (rat)-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029830 Svopl 10090 - 6:37983739-38046996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040486 Svopl-004 38015273-38046996 retained_intron
  ENSMUST00000096040 Svopl-001 37983739-38046996 protein_coding
  ENSMUST00000172585 Svopl-002 37984512-38031089 nonsense_mediated_decay
  ENSMUST00000173428 Svopl-003 38014818-38023287 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040486ENSMUST00000096040ENSMUST00000172585ENSMUST00000173428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040486 0.107±0.00 N/A 0.056±0.00 N/A N/A 0.057±0.02 N/A 0.534±0.08 0.008±0.00 0.065±0.03 0.022±0.00 0.156±0.14 0.025±0.02 0.009±0.00
ENSMUST00000096040 0.284±0.00 0.114±0.04 0.348±0.04 0.019±0.00 0.210±0.10 0.138±0.04 0.180±0.00 2.558±0.62 0.019±0.00 0.135±0.02 0.058±0.02 0.369±0.22 0.068±0.06 0.103±0.05
ENSMUST00000172585 0.854±0.40 0.388±0.07 0.186±0.00 N/A 0.812±0.34 1.216±0.71 0.157±0.06 3.692±1.21 0.036±0.03 0.159±0.08 0.073±0.06 0.450±0.25 0.077±0.03 0.071±0.00
ENSMUST00000173428 0.564±0.09 0.429±0.22 0.462±0.12 N/A 0.968±0.45 0.712±0.26 0.341±0.09 N/A 0.016±0.00 0.128±0.00 N/A 0.203±0.00 0.083±0.00 0.081±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996
CIL_0002QA CIL_0002QA_0002 CGP 6:37983739-38124586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057983 svopl SVOP-like protein_coding Danio_rerio
ENSG00000157703 SVOPL SVOP-like protein_coding Homo_sapiens

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