C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SVOP-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419765 SVOPL-005 ENSG00000157703 9606 - 7:138594600-138679079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLungOvaryPlacentaENST00000419765
Transcript ID Adrenal Brain Breast Kidney Lung Ovary Placenta
ENST00000419765 0.064±0.00 0.238±0.19 0.544±0.00 0.232±0.00 0.387±0.00 0.162±0.00 0.334±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0001 CGP 7:138460334-138701352
CIL_0002QA CIL_0002QA_0001 CGP 7:138594285-138799560

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096040 Svopl-001 protein_coding Mus_musculus 0 1707
ENSMUST00000040486 Svopl-004 retained_intron Mus_musculus 0 1192
ENSMUST00000172585 Svopl-002 nonsense_mediated_decay Mus_musculus 0 1179

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