C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ectodysplasin A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158813 EDA 9606 + X:69616067-70039469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338901 EDA-201 69616067-69617299 protein_coding
  ENST00000374548 EDA-003 69616067-69957504 retained_intron
  ENST00000374552 EDA-002 69616067-70039469 protein_coding
  ENST00000374553 EDA-001 69616067-70039469 protein_coding
  ENST00000502251 EDA-004 69616067-69957504 processed_transcript
  ENST00000503592 EDA-005 69620410-70033410 protein_coding
  ENST00000510681 EDA-006 69620429-69861117 processed_transcript
  ENST00000524573 EDA-008 69616117-70035637 protein_coding
  ENST00000525810 EDA-007 69616067-69861061 protein_coding
  ENST00000527388 EDA-009 69616067-69861061 protein_coding
  ENST00000530321 EDA-011 69620456-69861061 processed_transcript
  ENST00000533317 EDA-010 69616067-69957477 retained_intron
  ENST00000616899 EDA-202 69957024-70039469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374548ENST00000374552ENST00000374553ENST00000510681ENST00000524573ENST00000525810ENST00000616899
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374548 N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A N/A
ENST00000374553 0.437±0.00 N/A N/A N/A 0.204±0.00 0.576±0.00 0.209±0.00 N/A 0.686±0.37 0.056±0.00 1.065±0.00 N/A N/A
ENST00000510681 N/A N/A N/A N/A N/A N/A 0.693±0.00 N/A N/A N/A N/A N/A N/A
ENST00000524573 N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A 0.390±0.00 N/A N/A N/A N/A
ENST00000525810 N/A N/A 0.313±0.00 N/A 0.716±0.00 N/A N/A N/A N/A N/A N/A N/A 1.113±0.00
ENST00000616899 N/A 1.093±0.00 0.478±0.00 0.475±0.22 0.452±0.33 0.636±0.52 0.575±0.44 0.356±0.00 0.133±0.00 0.221±0.00 0.659±0.67 0.895±0.32 0.567±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YI CIL_0000YI_0002 CGP X:69505241-70039469
CIL_0002RK CIL_0002RK_0001 CGP X:69616067-70049938

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001942 IEA hair follicle development
GO:0005102 IDA receptor binding
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005856 TAS cytoskeleton
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006955 IEA immune response
GO:0007160 IEA cell-matrix adhesion
GO:0007165 TAS signal transduction
GO:0007398 TAS ectoderm development
GO:0010467 IEA gene expression
GO:0016020 TAS membrane
GO:0016021 TAS integral component of membrane
GO:0030154 IEA cell differentiation
GO:0042346 IEA positive regulation of NF-kappaB import into nucleus
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043473 IEA pigmentation
GO:0043588 IEA skin development
GO:0045177 IEA apical part of cell
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0060662 IEA salivary gland cavitation
GO:0060789 IEA hair follicle placode formation
GO:0061153 IEA trachea gland development
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074591 eda ectodysplasin A protein_coding Danio_rerio
ENSMUSG00000059327 Eda ectodysplasin-A protein_coding Mus_musculus

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