C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ectodysplasin A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374553 EDA-001 ENSG00000158813 9606 + X:69616067-70039469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartKidneyLungMuscleOvaryENST00000374553
Transcript ID Adipose Colon Heart Kidney Lung Muscle Ovary
ENST00000374553 0.437±0.00 0.204±0.00 0.576±0.00 0.209±0.00 0.686±0.37 0.056±0.00 1.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YI CIL_0000YI_0002 CGP X:69505241-70039469
CIL_0002RK CIL_0002RK_0001 CGP X:69616067-70049938

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IDA receptor binding
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0005856 TAS cytoskeleton
GO:0005886 TAS plasma membrane
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007398 TAS ectoderm development
GO:0016020 TAS:IEA membrane
GO:0016021 TAS integral component of membrane
GO:0030154 IEA cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113779 Eda-001 protein_coding Mus_musculus 0 2182
ENSMUST00000113778 Eda-005 protein_coding Mus_musculus 0 2152
ENSMUST00000113783 Eda-011 protein_coding Mus_musculus 0 2043
ENSMUST00000113781 Eda-006 protein_coding Mus_musculus 0 2013
ENSMUST00000113775 Eda-003 protein_coding Mus_musculus 0 1472
ENSMUST00000113776 Eda-002 protein_coding Mus_musculus 0 1472
ENSMUST00000071453 Eda-201 protein_coding Mus_musculus 0 1447
ENSMUST00000113780 Eda-004 protein_coding Mus_musculus 0 1410
ENSMUST00000113777 Eda-202 protein_coding Mus_musculus 0 1230
ENSMUST00000134582 Eda-010 retained_intron Mus_musculus 0 850
ENSMUST00000123547 Eda-009 processed_transcript Mus_musculus 0 405
ENSMUST00000145063 Eda-008 processed_transcript Mus_musculus 0 372

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