C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ectodysplasin A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616899 EDA-202 ENSG00000158813 9606 + X:69957024-70039469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000616899
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000616899 1.093±0.00 0.478±0.00 0.475±0.22 0.452±0.33 0.636±0.52 0.575±0.44 0.356±0.00 0.133±0.00 0.221±0.00 0.659±0.67 0.895±0.32 0.567±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YI CIL_0000YI_0002 CGP X:69505241-70039469
CIL_0002RK CIL_0002RK_0001 CGP X:69616067-70049938

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IDA receptor binding
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0005856 TAS cytoskeleton
GO:0005886 TAS plasma membrane
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007398 TAS ectoderm development
GO:0016020 TAS:IEA membrane
GO:0016021 TAS integral component of membrane
GO:0030154 IEA cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113779 Eda-001 protein_coding Mus_musculus 0 1513
ENSMUST00000113778 Eda-005 protein_coding Mus_musculus 0 1421
ENSMUST00000113783 Eda-011 protein_coding Mus_musculus 0 1375
ENSMUST00000113781 Eda-006 protein_coding Mus_musculus 0 1282
ENSMUST00000071453 Eda-201 protein_coding Mus_musculus 0 1020
ENSMUST00000113777 Eda-202 protein_coding Mus_musculus 0 771
ENSMUST00000113775 Eda-003 protein_coding Mus_musculus 0 771
ENSMUST00000113776 Eda-002 protein_coding Mus_musculus 0 771
ENSMUST00000113780 Eda-004 protein_coding Mus_musculus 0 732
ENSMUST00000123547 Eda-009 processed_transcript Mus_musculus 0 405
ENSMUST00000145063 Eda-008 processed_transcript Mus_musculus 0 372

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