C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SNF8, ESCRT-II complex subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159210 SNF8 9606 - 17:48929316-48945117 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290330 SNF8-002 48930374-48944810 protein_coding
  ENST00000502492 SNF8-001 48929316-48945117 protein_coding
  ENST00000504000 SNF8-003 48930390-48933318 retained_intron
  ENST00000506104 SNF8-014 48936041-48937107 retained_intron
  ENST00000507302 SNF8-007 48931643-48944747 nonsense_mediated_decay
  ENST00000509989 SNF8-011 48930426-48937054 nonsense_mediated_decay
  ENST00000509995 SNF8-008 48930371-48944733 nonsense_mediated_decay
  ENST00000510195 SNF8-005 48936996-48944806 retained_intron
  ENST00000510558 SNF8-006 48930371-48944806 nonsense_mediated_decay
  ENST00000511214 SNF8-013 48936034-48937239 retained_intron
  ENST00000512243 SNF8-009 48935703-48944708 retained_intron
  ENST00000514089 SNF8-015 48930381-48937118 processed_transcript
  ENST00000514929 SNF8-004 48931643-48944831 nonsense_mediated_decay
  ENST00000515174 SNF8-010 48936656-48944139 retained_intron
  ENST00000515572 SNF8-012 48930388-48933591 retained_intron
  ENST00000573795 SNF8-017 48930429-48944811 nonsense_mediated_decay
  ENST00000576353 SNF8-016 48930504-48944825 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290330ENST00000502492ENST00000504000ENST00000510195ENST00000510558ENST00000514089ENST00000514929ENST00000573795ENST00000576353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290330 29.476±0.00 23.342±0.00 1.430±0.00 N/A 25.327±0.00 15.731±10.64 12.130±10.85 41.749±0.00 11.586±8.18 10.172±8.27 8.045±4.20 24.122±1.32 20.104±7.10 25.261±0.00
ENST00000502492 N/A N/A N/A 2.274±0.00 N/A 3.441±0.00 N/A N/A N/A N/A N/A 2.733±0.13 3.263±0.00 3.391±0.00
ENST00000504000 N/A 5.314±0.00 N/A 3.296±0.00 1.211±0.00 N/A 0.846±0.00 5.753±0.00 N/A 1.938±0.81 N/A 3.885±1.29 N/A 5.661±1.51
ENST00000510195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.076±0.00 35.821±0.00
ENST00000510558 N/A N/A N/A N/A N/A N/A 0.978±0.00 2.181±0.00 N/A N/A N/A N/A N/A N/A
ENST00000514089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.165±0.00 N/A N/A N/A
ENST00000514929 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.570±0.00 N/A N/A N/A N/A
ENST00000573795 N/A N/A N/A N/A N/A N/A N/A N/A 19.586±0.00 N/A 12.392±0.00 N/A N/A N/A
ENST00000576353 26.858±0.00 25.278±0.00 N/A N/A 14.539±12.13 N/A 14.870±0.00 13.177±11.73 N/A N/A N/A 17.748±0.43 18.837±3.66 20.785±0.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058076 snf8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000006058 Snf8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) protein_coding Mus_musculus

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