C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF8, ESCRT-II complex subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290330 SNF8-002 ENSG00000159210 9606 - 17:48930374-48944810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290330
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290330 29.476±0.00 23.342±0.00 1.430±0.00 25.327±0.00 15.731±10.64 12.130±10.85 41.749±0.00 11.586±8.18 10.172±8.27 8.045±4.20 24.122±1.32 20.104±7.10 25.261±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006217 Snf8-001 protein_coding Mus_musculus 0 1129
ENSMUST00000107700 Snf8-005 protein_coding Mus_musculus 0 828
ENSMUST00000156524 Snf8-004 processed_transcript Mus_musculus 0 652
ENSMUST00000156394 Snf8-006 processed_transcript Mus_musculus 0 425
ENSMUST00000150946 Snf8-003 processed_transcript Mus_musculus 0 416
ENSMUST00000145749 Snf8-002 processed_transcript Mus_musculus 0 211

Loading