C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006058 Snf8 10090 + 11:96034885-96047430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006217 Snf8-001 96034885-96047430 protein_coding
  ENSMUST00000107700 Snf8-005 96034965-96047430 protein_coding
  ENSMUST00000145749 Snf8-002 96044690-96047430 processed_transcript
  ENSMUST00000150946 Snf8-003 96034951-96039878 processed_transcript
  ENSMUST00000156394 Snf8-006 96044824-96047319 processed_transcript
  ENSMUST00000156524 Snf8-004 96034956-96043661 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006217ENSMUST00000107700ENSMUST00000145749ENSMUST00000150946ENSMUST00000156394ENSMUST00000156524
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006217 12.012±0.75 5.470±1.12 19.851±0.93 35.153±28.60 7.406±2.08 16.503±2.52 7.845±0.65 19.419±2.26 18.617±8.52 9.562±1.40 17.314±3.08 13.684±9.79 39.446±16.63 28.132±3.37
ENSMUST00000107700 3.160±0.12 1.979±0.45 N/A 6.142±0.00 2.506±0.66 4.457±0.00 2.716±0.45 4.282±1.25 3.210±0.60 2.924±0.44 N/A 4.940±3.20 10.530±0.73 5.681±0.83
ENSMUST00000145749 2.265±0.00 1.778±0.22 4.053±0.00 3.467±0.00 2.187±0.81 3.036±0.49 0.743±0.00 1.471±0.01 1.849±0.00 2.143±0.00 1.202±0.00 2.678±0.84 3.253±0.40 N/A
ENSMUST00000150946 N/A N/A N/A N/A N/A N/A N/A N/A 20.843±0.00 N/A N/A N/A N/A N/A
ENSMUST00000156394 N/A N/A N/A N/A 1.948±0.00 N/A N/A N/A N/A 2.943±0.00 N/A N/A N/A N/A
ENSMUST00000156524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.081±0.00 24.546±0.00 11.867±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005768 IEA endosome
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0042803 IEA protein homodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058076 snf8 SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000159210 SNF8 SNF8, ESCRT-II complex subunit protein_coding Homo_sapiens

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