C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF8, ESCRT-II complex subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502492 SNF8-001 ENSG00000159210 9606 - 17:48929316-48945117 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENST00000502492
Transcript ID Brain Colon Ovary Placenta Testis
ENST00000502492 2.274±0.00 3.441±0.00 2.733±0.13 3.263±0.00 3.391±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006217 Snf8-001 protein_coding Mus_musculus 0 1168
ENSMUST00000107700 Snf8-005 protein_coding Mus_musculus 0 828
ENSMUST00000156524 Snf8-004 processed_transcript Mus_musculus 0 652
ENSMUST00000156394 Snf8-006 processed_transcript Mus_musculus 0 438
ENSMUST00000150946 Snf8-003 processed_transcript Mus_musculus 0 416
ENSMUST00000145749 Snf8-002 processed_transcript Mus_musculus 0 211

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