C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160131 VMA21 9606 + X:151396515-151409364 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330374 VMA21-001 151397204-151409364 protein_coding
  ENST00000370361 VMA21-003 151396566-151405157 protein_coding
  ENST00000477649 VMA21-002 151396515-151405157 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330374ENST00000370361ENST00000477649
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330374 7.184±0.00 5.961±0.00 7.325±1.05 5.530±1.05 3.653±0.00 2.489±0.56 4.004±2.63 3.820±1.74 4.045±0.06 2.141±0.00 5.005±1.15 3.675±0.22 5.418±2.83
ENST00000370361 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.694±0.00 N/A N/A N/A
ENST00000477649 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.741±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0001 VISTA X:150939220-151540580
CIL_0001AU CIL_0001AU_0001 CGP X:151176653-151409364

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 IDA lysosome
GO:0005789 IDA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030127 IDA COPII vesicle coat
GO:0070072 IDA vacuolar proton-transporting V-type ATPase complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000093945 VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000061619 Vma21-ps VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene protein_coding Mus_musculus
ENSMUSG00000073131 Vma21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein_coding Mus_musculus

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