C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330374 VMA21-001 ENSG00000160131 9606 + X:151397204-151409364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330374
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330374 7.184±0.00 5.961±0.00 7.325±1.05 5.530±1.05 3.653±0.00 2.489±0.56 4.004±2.63 3.820±1.74 4.045±0.06 2.141±0.00 5.005±1.15 3.675±0.22 5.418±2.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0001 VISTA X:150939220-151540580
CIL_0001AU CIL_0001AU_0001 CGP X:151176653-151409364

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IDA lysosome
GO:0005789 IDA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030127 IDA COPII vesicle coat
GO:0070072 IDA vacuolar proton-transporting V-type ATPase complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114576 Vma21-001 protein_coding Mus_musculus 0 405
ENSMUST00000114575 Vma21-003 protein_coding Mus_musculus 0 353
ENSMUST00000114577 Vma21-002 protein_coding Mus_musculus 0 351
ENSMUST00000138979 Vma21-004 processed_transcript Mus_musculus 0 346
ENSMUST00000121259 Gm14845-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000114578 Vma21-ps-201 protein_coding Mus_musculus 0 333

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