C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009DG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1746 VISTA 9606 X:150939220-151540580
GeneTranscriptPositionBiotype
ENSG00000029993 (HMGB3)
high mobility group box 3 		ENST00000325307 (HMGB3-001) 150983286-150990775 protein_coding
ENST00000419110 (HMGB3-002) 150980509-150987877 protein_coding
ENST00000430118 (HMGB3-004) 150985531-150987297 protein_coding
ENST00000448905 (HMGB3-201) 150983406-150987932 protein_coding
ENST00000455596 (HMGB3-003) 150983385-150987892 protein_coding
ENSG00000160131 (VMA21)
VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) 		ENST00000330374 (VMA21-001) 151397204-151409364 protein_coding
ENST00000370361 (VMA21-003) 151396566-151405157 protein_coding
ENST00000477649 (VMA21-002) 151396515-151405157 processed_transcript
ENSG00000214915 (XX-FW80269A6.1)
 ENST00000454307 (XX-FW80269A6.1-001) 151515551-151516245 lincRNA
ENSG00000228717 (AF013593.1)
 ENST00000458074 (AF013593.1-001) 151226229-151227715 processed_pseudogene
ENSG00000230508 (RPL19P21)
ribosomal protein L19 pseudogene 21 		ENST00000424919 (RPL19P21-001) 150993501-150994091 processed_pseudogene
ENSG00000234696 (GPR50-AS1)
GPR50 antisense RNA 1 		ENST00000454196 (GPR50-AS1-001) 151175192-151177836 antisense
ENSG00000269993 (AF003625.3)
 ENST00000602313 (AF003625.3-001) 151182386-151182855 lincRNA
ENSG00000270052 (WI2-80269A6.1)
 ENST00000602419 (WI2-80269A6.1-001) 151497726-151498354 lincRNA
ENSG00000278724 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000615501 (Metazoa_SRP.1-488) 151275509-151275789 misc_RNA
CIL_0009DG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1746 VISTA 10090 X:71400355-72001555
GeneTranscriptPositionBiotype
ENSMUSG00000005864 (Cnga2)
cyclic nucleotide gated channel alpha 2 		ENSMUST00000006020 (Cnga2-001) 71991849-72010218 protein_coding
ENSMUST00000145642 (Cnga2-002) 71991855-72001483 processed_transcript
ENSMUSG00000015214 (Mtmr1)
myotubularin related protein 1 		ENSMUST00000015358 (Mtmr1-201) 71364760-71419196 protein_coding
ENSMUST00000114601 (Mtmr1-001) 71364760-71419196 protein_coding
ENSMUST00000130179 (Mtmr1-009) 71393991-71418664 retained_intron
ENSMUST00000130909 (Mtmr1-004) 71369812-71388734 protein_coding
ENSMUST00000132837 (Mtmr1-005) 71364937-71394296 protein_coding
ENSMUST00000138565 (Mtmr1-008) 71391689-71392927 retained_intron
ENSMUST00000146213 (Mtmr1-002) 71364760-71388756 protein_coding
ENSMUST00000149323 (Mtmr1-003) 71369812-71388734 protein_coding
ENSMUST00000156307 (Mtmr1-007) 71391188-71392590 retained_intron
ENSMUST00000156756 (Mtmr1-006) 71369812-71388734 protein_coding
ENSMUSG00000015217 (Hmgb3)
high mobility group box 3 		ENSMUST00000015361 (Hmgb3-002) 71555941-71560676 protein_coding
ENSMUST00000072699 (Hmgb3-001) 71555918-71560676 protein_coding
ENSMUST00000088874 (Hmgb3-004) 71555990-71560676 protein_coding
ENSMUST00000114582 (Hmgb3-003) 71555928-71560676 protein_coding
ENSMUST00000123100 (Hmgb3-005) 71556946-71559273 protein_coding
ENSMUST00000132145 (Hmgb3-006) 71557783-71559773 retained_intron
ENSMUSG00000033361 (Prrg3)
proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) 		ENSMUST00000048790 (Prrg3-001) 71962982-71972722 protein_coding
ENSMUST00000126362 (Prrg3-002) 71962624-71966651 protein_coding
ENSMUST00000170096 (Prrg3-201) 71962625-71970110 protein_coding
ENSMUSG00000035776 (Cd99l2)
CD99 antigen-like 2 		ENSMUST00000037391 (Cd99l2-001) 71420060-71492849 protein_coding
ENSMUST00000080035 (Cd99l2-006) 71420060-71492645 protein_coding
ENSMUST00000114586 (Cd99l2-002) 71420060-71492849 protein_coding
ENSMUST00000114587 (Cd99l2-004) 71422624-71492849 protein_coding
ENSMUST00000128515 (Cd99l2-005) 71439335-71492649 retained_intron
ENSMUST00000148177 (Cd99l2-003) 71491899-71492605 processed_transcript
ENSMUSG00000053593 (Fate1)
fetal and adult testis expressed 1 		ENSMUST00000066116 (Fate1-002) 71972986-71989046 protein_coding
ENSMUST00000114569 (Fate1-001) 71981522-71989046 protein_coding
ENSMUST00000137031 (Fate1-003) 71983205-71988768 processed_transcript
ENSMUSG00000056380 (Gpr50)
G-protein-coupled receptor 50 		ENSMUST00000070449 (Gpr50-001) 71663667-71669257 protein_coding
ENSMUST00000131554 (Gpr50-003) 71663966-71667392 processed_transcript
ENSMUST00000144712 (Gpr50-002) 71663966-71667392 processed_transcript
ENSMUSG00000073130 (Gm1141)
predicted gene 1141 		ENSMUST00000101495 (Gm1141-001) 71932438-71940870 protein_coding
ENSMUST00000154780 (Gm1141-002) 71928816-71936389 protein_coding
ENSMUSG00000073131 (Vma21)
VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) 		ENSMUST00000114575 (Vma21-003) 71816790-71824706 protein_coding
ENSMUST00000114576 (Vma21-001) 71816758-71824706 protein_coding
ENSMUST00000114577 (Vma21-002) 71815924-71824706 protein_coding
ENSMUST00000138979 (Vma21-004) 71816813-71820984 processed_transcript
ENSMUST00000154054 (Vma21-005) 71816790-71839757 processed_transcript
ENSMUSG00000083411 (Rpl30-ps10)
ribosomal protein L30, pseudogene 10 		ENSMUST00000117119 (Rpl30-ps10-001) 71803688-71804034 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DG_0001ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000160131ENST00000330374ENST00000370361ENST00000477649ENSG00000214915ENST00000454307ENSG00000228717ENST00000458074ENSG00000230508ENST00000424919ENSG00000234696ENST00000454196ENSG00000269993ENST00000602313ENSG00000270052ENST00000602419ENSG00000278724ENST00000615501CIL_0009DG_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009DG_0001ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000160131ENST00000330374ENST00000370361ENST00000477649ENSG00000214915ENST00000454307ENSG00000228717ENST00000458074ENSG00000230508ENST00000424919ENSG00000234696ENST00000454196ENSG00000269993ENST00000602313ENSG00000270052ENST00000602419ENSG00000278724ENST00000615501CIL_0009DG_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000029993 ENST00000325307 1.815±0.00 1.773±0.00 N/A 3.373±1.82 1.079±0.73 1.317±0.22 0.577±0.00 1.841±0.60 3.411±2.94 0.922±0.56 2.158±2.06 1.903±1.06 30.917±11.80 4.492±1.12
ENST00000419110 N/A N/A N/A 3.283±0.00 0.893±0.00 3.452±0.00 N/A 3.299±0.00 0.761±0.00 1.043±0.00 N/A N/A N/A 6.916±0.00
ENST00000430118 N/A N/A N/A N/A 4.327±0.00 N/A N/A N/A N/A N/A N/A 6.052±4.17 52.974±0.00 18.497±0.00
ENST00000448905 3.597±0.00 3.026±0.00 N/A 5.754±0.00 N/A N/A 1.153±0.00 N/A 10.267±0.00 2.096±0.00 N/A N/A N/A 8.005±0.00
ENST00000455596 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.245±0.00 3.805±0.00 5.237±0.88 97.916±34.82 14.348±0.00
ENSG00000160131 ENST00000330374 7.184±0.00 5.961±0.00 N/A 7.325±1.05 5.530±1.05 3.653±0.00 2.489±0.56 4.004±2.63 3.820±1.74 4.045±0.06 2.141±0.00 5.005±1.15 3.675±0.22 5.418±2.83
ENST00000370361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.694±0.00 N/A N/A N/A
ENST00000477649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.741±0.00 N/A N/A N/A
ENSG00000214915 ENST00000454307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 0.131±0.00 0.335±0.28
ENSG00000228717 ENST00000458074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A
ENSG00000230508 ENST00000424919 0.151±0.00 0.133±0.00 N/A 0.106±0.00 0.071±0.00 0.193±0.00 0.179±0.00 0.104±0.00 0.183±0.00 0.277±0.00 0.550±0.00 0.041±0.00 N/A 0.089±0.00
ENSG00000234696 ENST00000454196 N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.095±0.04
ENSG00000269993 ENST00000602313 0.629±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00
ENSG00000270052 ENST00000602419 N/A N/A N/A N/A 0.083±0.00 N/A 0.073±0.00 N/A 0.172±0.00 N/A N/A N/A N/A N/A
ENSG00000278724 ENST00000615501 0.115±0.00 0.294±0.00 N/A 0.587±0.00 0.061±0.00 0.167±0.00 0.349±0.00 0.729±0.00 0.268±0.00 0.461±0.00 0.109±0.00 1.255±0.00 N/A 0.273±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005864 ENSMUST00000006020 0.028±0.02 N/A 0.061±0.00 0.068±0.04 0.066±0.02 N/A 0.020±0.00 N/A 0.021±0.01 0.583±0.25 0.033±0.02 0.063±0.02 0.028±0.02 0.047±0.02
ENSMUST00000145642 0.120±0.00 N/A N/A N/A 0.379±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000015214 ENSMUST00000015358 2.108±1.16 1.853±0.28 12.141±1.14 3.527±2.05 1.833±1.40 2.099±1.07 0.716±0.02 2.962±0.29 2.154±0.62 2.538±0.70 3.448±2.33 2.202±1.21 2.490±0.95 0.549±0.03
ENSMUST00000114601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130179 2.955±0.58 9.327±1.92 N/A 2.101±0.35 4.984±2.01 3.064±1.12 2.005±0.52 2.012±0.44 1.786±1.14 3.156±1.47 N/A 5.422±1.81 0.968±0.00 0.935±0.47
ENSMUST00000130909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132837 N/A N/A N/A 7.385±0.00 N/A N/A N/A N/A N/A N/A N/A 5.922±0.00 3.848±1.90 3.642±0.00
ENSMUST00000138565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146213 N/A 11.640±6.38 N/A N/A 5.486±0.94 3.679±1.44 N/A N/A N/A N/A N/A 5.309±0.35 N/A N/A
ENSMUST00000149323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000015217 ENSMUST00000015361 N/A N/A N/A N/A 1.158±0.00 N/A N/A N/A N/A N/A 0.784±0.22 8.952±4.90 0.524±0.00 N/A
ENSMUST00000072699 N/A N/A 1.948±0.36 17.326±11.72 0.190±0.00 N/A 1.590±0.02 1.012±0.00 53.155±27.09 N/A 0.415±0.09 6.619±0.90 5.454±7.45 2.737±0.70
ENSMUST00000088874 1.230±0.38 N/A 1.339±0.00 15.373±0.00 1.238±0.51 3.184±1.33 N/A 1.754±0.51 0.604±0.16 1.357±0.21 N/A 7.269±1.80 0.304±0.00 1.519±0.21
ENSMUST00000114582 4.786±2.55 125.384±54.27 4.401±0.61 40.594±28.13 4.110±2.25 9.565±2.02 9.060±2.85 8.049±1.69 15.950±16.83 6.471±1.18 1.038±0.36 23.324±14.61 5.316±5.63 5.849±2.85
ENSMUST00000123100 N/A N/A N/A 4.340±0.00 0.684±0.00 N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A
ENSMUST00000132145 N/A N/A N/A 1.620±0.00 0.396±0.00 N/A N/A N/A N/A N/A 0.793±0.22 8.960±2.84 1.450±0.67 2.513±0.00
ENSMUSG00000033361 ENSMUST00000048790 3.329±1.79 N/A 2.724±0.23 3.464±1.07 1.013±0.49 0.324±0.22 1.403±0.60 0.368±0.12 0.697±0.49 15.160±2.71 0.464±0.27 3.825±1.23 1.876±1.35 0.546±0.38
ENSMUST00000126362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170096 N/A 0.879±0.00 N/A N/A N/A 0.393±0.15 N/A 0.237±0.00 0.139±0.00 N/A N/A 1.507±0.00 N/A N/A
ENSMUSG00000035776 ENSMUST00000037391 13.104±2.05 12.149±2.35 10.711±0.24 12.019±6.31 7.362±0.42 4.065±0.74 5.301±0.42 8.248±1.29 3.700±0.98 6.048±0.43 5.391±0.99 9.216±1.79 3.093±1.51 1.205±0.14
ENSMUST00000080035 7.980±1.13 6.958±2.38 9.186±0.70 8.365±2.75 11.177±6.33 2.665±0.93 15.610±2.10 4.517±0.88 3.072±1.07 6.580±0.87 14.811±0.74 5.290±2.97 2.476±0.98 1.085±0.32
ENSMUST00000114586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.263±0.00 3.706±0.00
ENSMUST00000128515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053593 ENSMUST00000066116 0.060±0.02 0.248±0.04 0.024±0.01 0.022±0.00 0.091±0.01 N/A N/A N/A 0.017±0.01 0.136±0.00 0.057±0.00 0.203±0.02 0.039±0.02 N/A
ENSMUST00000114569 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137031 N/A N/A 0.041±0.02 0.011±0.00 N/A N/A N/A N/A 0.018±0.00 0.065±0.00 N/A 0.237±0.14 0.022±0.02 N/A
ENSMUSG00000056380 ENSMUST00000070449 0.012±0.00 0.018±0.00 0.011±0.01 0.687±0.46 0.010±0.00 N/A N/A 0.012±0.01 0.029±0.03 0.020±0.01 0.017±0.00 0.050±0.02 8.374±5.95 0.123±0.09
ENSMUST00000131554 N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144712 N/A N/A 0.020±0.00 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A 0.232±0.19 N/A 0.470±0.10
ENSMUSG00000073130 ENSMUST00000101495 0.165±0.10 0.286±0.06 N/A 0.189±0.08 0.207±0.07 0.092±0.06 0.055±0.03 0.061±0.04 0.060±0.05 0.112±0.05 0.041±0.02 0.363±0.17 0.176±0.05 21.923±9.70
ENSMUST00000154780 N/A N/A 0.065±0.00 N/A N/A 0.134±0.00 N/A N/A N/A N/A 0.051±0.01 0.200±0.01 N/A N/A
ENSMUSG00000073131 ENSMUST00000114575 N/A 1.307±0.00 N/A N/A 0.431±0.00 0.330±0.10 N/A N/A N/A N/A N/A 0.544±0.11 N/A 0.121±0.00
ENSMUST00000114576 3.629±0.67 11.086±1.20 5.574±0.77 6.427±3.04 2.580±1.00 2.057±0.60 1.415±0.29 4.513±0.66 4.106±0.71 3.339±0.19 1.099±0.37 2.843±1.69 3.752±2.59 0.678±0.32
ENSMUST00000114577 0.552±0.11 N/A N/A N/A 0.796±0.56 0.396±0.17 0.736±0.09 0.438±0.00 N/A 0.897±0.04 3.014±0.89 0.728±0.22 1.905±1.01 N/A
ENSMUST00000138979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A
ENSMUSG00000083411 ENSMUST00000117119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.00 N/A

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