C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330317 WDR4-004 ENSG00000160193 9606 - 21:42843094-42879531 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000330317
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000330317 1.339±0.00 2.526±0.00 0.582±0.40 1.318±0.00 0.799±0.00 0.193±0.14 2.208±0.00 2.392±1.90 3.389±3.02 2.335±0.40 1.745±0.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_0001D2 CIL_0001D2_0002 CGP 21:42653636-42879568
CIL_0001I2 CIL_0001I2_0001 CGP 21:42843094-42913304

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006400 IDA tRNA modification
GO:0008176 IDA tRNA (guanine-N7-)-methyltransferase activity
GO:0030488 IEA tRNA methylation
GO:0036265 IEA RNA (guanine-N7)-methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171171 Wdr4-001 protein_coding Mus_musculus 0 979
ENSMUST00000172284 Wdr4-003 nonsense_mediated_decay Mus_musculus 0 676
ENSMUST00000169224 Wdr4-009 retained_intron Mus_musculus 0 339
ENSMUST00000167419 Wdr4-005 protein_coding Mus_musculus 0 313
ENSMUST00000170176 Wdr4-002 nonsense_mediated_decay Mus_musculus 0 313
ENSMUST00000166626 Wdr4-006 protein_coding Mus_musculus 0 265
ENSMUST00000171291 Wdr4-007 protein_coding Mus_musculus 5e-32 143

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