C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160408 ST6GALNAC6 9606 - 9:127885321-127905408 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291839 ST6GALNAC6-201 127885321-127897981 protein_coding
  ENST00000373141 ST6GALNAC6-010 127885322-127897408 protein_coding
  ENST00000373142 ST6GALNAC6-006 127885322-127899646 protein_coding
  ENST00000373144 ST6GALNAC6-008 127885322-127899655 protein_coding
  ENST00000373146 ST6GALNAC6-007 127885321-127899653 protein_coding
  ENST00000447681 ST6GALNAC6-011 127890637-127905330 protein_coding
  ENST00000463086 ST6GALNAC6-014 127886754-127899593 processed_transcript
  ENST00000478319 ST6GALNAC6-004 127894549-127899535 processed_transcript
  ENST00000480417 ST6GALNAC6-012 127887535-127899606 processed_transcript
  ENST00000481355 ST6GALNAC6-001 127894522-127899416 processed_transcript
  ENST00000483353 ST6GALNAC6-015 127903015-127905324 retained_intron
  ENST00000485320 ST6GALNAC6-009 127885326-127899574 processed_transcript
  ENST00000494541 ST6GALNAC6-013 127890698-127899604 processed_transcript
  ENST00000494611 ST6GALNAC6-005 127896246-127905408 processed_transcript
  ENST00000542456 ST6GALNAC6-202 127885321-127897408 protein_coding
  ENST00000622357 ST6GALNAC6-203 127885321-127905348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000291839ENST00000373141ENST00000373142ENST00000373144ENST00000373146ENST00000480417ENST00000485320ENST00000622357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000291839 N/A 25.828±0.00 N/A 25.892±0.00 N/A 19.153±0.00 N/A 18.065±15.07 N/A N/A 33.770±18.43 14.593±5.15 11.033±0.00
ENST00000373141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.945±0.00 N/A N/A
ENST00000373142 N/A N/A 0.953±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373144 77.192±0.00 33.807±0.00 N/A 19.784±14.71 52.942±50.51 44.154±0.00 15.800±0.00 18.499±0.00 12.071±10.72 72.300±0.00 31.856±22.27 15.480±0.00 28.289±0.00
ENST00000373146 N/A N/A N/A 4.124±0.00 1.430±0.00 N/A N/A N/A 0.914±0.00 2.948±0.00 N/A N/A N/A
ENST00000480417 N/A N/A N/A N/A N/A N/A N/A N/A 2.175±0.00 N/A N/A N/A N/A
ENST00000485320 N/A N/A N/A 3.354±0.00 N/A 11.579±9.50 N/A N/A 15.667±0.00 42.011±0.00 0.801±0.00 7.418±2.86 N/A
ENST00000622357 N/A N/A N/A N/A N/A 3.523±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CF CIL_0002CF_0002 CGP 9:127885321-127917038

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001574 ISS ganglioside biosynthetic process
GO:0001665 ISS alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 NAS plasma membrane
GO:0006486 IEA protein glycosylation
GO:0006677 IDA glycosylceramide metabolic process
GO:0006687 IDA glycosphingolipid metabolic process
GO:0008373 ISS:IEA sialyltransferase activity
GO:0009100 IDA glycoprotein metabolic process
GO:0009312 ISS oligosaccharide biosynthetic process
GO:0009988 IC cell-cell recognition
GO:0016021 IEA integral component of membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036913 st6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein_coding Danio_rerio
ENSMUSG00000026811 St6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein_coding Mus_musculus

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