C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373144 ST6GALNAC6-008 ENSG00000160408 9606 - 9:127885322-127899655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000373144
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000373144 77.192±0.00 33.807±0.00 19.784±14.71 52.942±50.51 44.154±0.00 15.800±0.00 18.499±0.00 12.071±10.72 72.300±0.00 31.856±22.27 15.480±0.00 28.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CF CIL_0002CF_0002 CGP 9:127885321-127917038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001574 ISS ganglioside biosynthetic process
GO:0001665 ISS alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 NAS plasma membrane
GO:0006486 IEA protein glycosylation
GO:0006677 IDA glycosylceramide metabolic process
GO:0006687 IDA glycosphingolipid metabolic process
GO:0008373 ISS:IEA sialyltransferase activity
GO:0009100 IDA glycoprotein metabolic process
GO:0009312 ISS oligosaccharide biosynthetic process
GO:0009988 IC cell-cell recognition
GO:0016021 IEA integral component of membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113290 St6galnac6-203 protein_coding Mus_musculus 0 1611
ENSMUST00000081879 St6galnac6-007 protein_coding Mus_musculus 0 1445
ENSMUST00000095045 St6galnac6-202 protein_coding Mus_musculus 0 1445
ENSMUST00000072111 St6galnac6-201 protein_coding Mus_musculus 0 1441
ENSMUST00000095044 St6galnac6-001 protein_coding Mus_musculus 0 1441
ENSMUST00000183538 St6galnac6-002 nonsense_mediated_decay Mus_musculus 0 1325
ENSMUST00000131229 St6galnac6-004 protein_coding Mus_musculus 0 1125
ENSMUST00000140983 St6galnac6-005 protein_coding Mus_musculus 0 955
ENSMUST00000149220 St6galnac6-012 processed_transcript Mus_musculus 0 845
ENSMUST00000128811 St6galnac6-010 protein_coding Mus_musculus 0 496
ENSMUST00000126636 St6galnac6-011 processed_transcript Mus_musculus 0 444
ENSMUST00000129165 St6galnac6-008 protein_coding Mus_musculus 0 292

Loading