C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161813 LARP4 9606 + 12:50392383-50480004 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293618 LARP4-201 50400809-50479996 protein_coding
  ENST00000347328 LARP4-001 50400985-50477497 protein_coding
  ENST00000398473 LARP4-002 50400899-50480004 protein_coding
  ENST00000429001 LARP4-015 50400857-50477517 protein_coding
  ENST00000517559 LARP4-008 50401108-50435552 protein_coding
  ENST00000518444 LARP4-003 50400929-50476463 protein_coding
  ENST00000518561 LARP4-006 50400956-50461487 protein_coding
  ENST00000520064 LARP4-018 50440439-50476456 protein_coding
  ENST00000521120 LARP4-009 50440479-50454962 retained_intron
  ENST00000522085 LARP4-004 50400908-50461487 protein_coding
  ENST00000523389 LARP4-007 50400950-50429089 protein_coding
  ENST00000548174 LARP4-011 50400889-50429091 protein_coding
  ENST00000548697 LARP4-013 50400895-50429086 protein_coding
  ENST00000548993 LARP4-014 50400896-50437785 protein_coding
  ENST00000550260 LARP4-017 50401001-50437778 protein_coding
  ENST00000550522 LARP4-010 50392383-50430551 protein_coding
  ENST00000551886 LARP4-016 50400932-50435599 protein_coding
  ENST00000552445 LARP4-012 50401193-50430565 protein_coding
  ENST00000614335 LARP4-202 50400907-50475962 protein_coding
  ENST00000615080 LARP4-203 50400929-50441618 protein_coding
  ENST00000616828 LARP4-204 50400908-50461483 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293618ENST00000347328ENST00000398473ENST00000429001ENST00000518444ENST00000522085ENST00000614335ENST00000616828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293618 N/A N/A N/A N/A 0.965±0.00 1.289±0.00 N/A N/A 0.961±0.00 N/A N/A 4.022±0.00 N/A 0.995±0.00
ENST00000347328 N/A N/A 1.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00
ENST00000398473 3.473±0.00 0.606±0.00 1.253±0.00 1.598±0.92 2.695±0.00 3.042±1.20 3.756±1.79 9.034±1.44 5.643±1.74 6.227±2.49 2.589±0.00 4.011±2.16 1.895±0.39 2.641±1.37
ENST00000429001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.899±0.00
ENST00000518444 N/A N/A 1.175±0.00 N/A 1.713±0.00 N/A N/A 4.397±0.00 N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000522085 N/A N/A N/A N/A N/A N/A N/A N/A 5.823±0.00 N/A N/A N/A N/A N/A
ENST00000614335 N/A N/A 2.383±0.00 N/A N/A 3.754±0.00 1.763±0.00 N/A 2.395±0.00 N/A N/A N/A N/A N/A
ENST00000616828 N/A N/A N/A N/A 3.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_00051T CIL_00051T_0001 CGP 12:50175788-50396622
CIL_000058 CIL_000058_0001 CGP 12:50326230-50480004
CIL_0006DT CIL_0006DT_0001 CGP 12:50392383-50748667

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0007010 IMP cytoskeleton organization
GO:0016020 IDA membrane
GO:0022604 IMP regulation of cell morphogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074979 larp4ab La ribonucleoprotein domain family, member 4Ab protein_coding Danio_rerio
ENSDARG00000078401 larp4aa La ribonucleoprotein domain family, member 4Aa protein_coding Danio_rerio
ENSMUSG00000023025 Larp4 La ribonucleoprotein domain family, member 4 protein_coding Mus_musculus

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