C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023025 Larp4 10090 + 15:99970074-100016351 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057632 Larp4-201 99970074-100016351 protein_coding
  ENSMUST00000100206 Larp4-202 99972780-100016351 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057632ENSMUST00000100206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057632 5.114±1.90 6.901±1.86 N/A N/A 5.796±2.66 7.966±1.19 3.402±0.00 5.707±2.68 5.109±2.11 7.496±1.28 N/A 10.210±4.10 N/A 2.621±0.22
ENSMUST00000100206 2.068±0.94 1.753±0.31 6.432±0.18 3.506±2.09 3.612±0.99 1.679±0.34 2.384±1.54 4.476±1.75 5.214±3.30 1.635±0.00 4.505±0.40 6.666±3.46 11.262±5.68 3.028±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_000058 CIL_000058_0002 CGP 15:99918348-100016351
CIL_0006DT CIL_0006DT_0002 CGP 15:99970074-100219473

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0007010 IEA cytoskeleton organization
GO:0016020 IEA membrane
GO:0022604 IEA regulation of cell morphogenesis
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074979 larp4ab La ribonucleoprotein domain family, member 4Ab protein_coding Danio_rerio
ENSDARG00000078401 larp4aa La ribonucleoprotein domain family, member 4Aa protein_coding Danio_rerio
ENSG00000161813 LARP4 La ribonucleoprotein domain family, member 4 protein_coding Homo_sapiens

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