C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000058_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185958-ENSG00000161813 CGP 9606 12:50326230-50480004
GeneTranscriptPositionBiotype
ENSG00000161813 (LARP4)
La ribonucleoprotein domain family, member 4 		ENST00000293618 (LARP4-201) 50400809-50479996 protein_coding
ENST00000347328 (LARP4-001) 50400985-50477497 protein_coding
ENST00000398473 (LARP4-002) 50400899-50480004 protein_coding
ENST00000429001 (LARP4-015) 50400857-50477517 protein_coding
ENST00000517559 (LARP4-008) 50401108-50435552 protein_coding
ENST00000518444 (LARP4-003) 50400929-50476463 protein_coding
ENST00000518561 (LARP4-006) 50400956-50461487 protein_coding
ENST00000520064 (LARP4-018) 50440439-50476456 protein_coding
ENST00000521120 (LARP4-009) 50440479-50454962 retained_intron
ENST00000522085 (LARP4-004) 50400908-50461487 protein_coding
ENST00000523389 (LARP4-007) 50400950-50429089 protein_coding
ENST00000548174 (LARP4-011) 50400889-50429091 protein_coding
ENST00000548697 (LARP4-013) 50400895-50429086 protein_coding
ENST00000548993 (LARP4-014) 50400896-50437785 protein_coding
ENST00000550260 (LARP4-017) 50401001-50437778 protein_coding
ENST00000550522 (LARP4-010) 50392383-50430551 protein_coding
ENST00000551886 (LARP4-016) 50400932-50435599 protein_coding
ENST00000552445 (LARP4-012) 50401193-50430565 protein_coding
ENST00000614335 (LARP4-202) 50400907-50475962 protein_coding
ENST00000615080 (LARP4-203) 50400929-50441618 protein_coding
ENST00000616828 (LARP4-204) 50400908-50461483 protein_coding
ENSG00000185958 (FAM186A)
family with sequence similarity 186, member A 		ENST00000327337 (FAM186A-002) 50327312-50396484 protein_coding
ENST00000539751 (FAM186A-003) 50327309-50334103 nonsense_mediated_decay
ENST00000543096 (FAM186A-201) 50326230-50350885 protein_coding
ENST00000543111 (FAM186A-001) 50326230-50396622 protein_coding
ENSG00000244266 (RP11-112N23.1)
 ENST00000498788 (RP11-112N23.1-001) 50365652-50366086 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_000058_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045350-ENSMUSG00000023025 CGP 10090 15:99918348-100016351
GeneTranscriptPositionBiotype
ENSMUSG00000023025 (Larp4)
La ribonucleoprotein domain family, member 4 		ENSMUST00000057632 (Larp4-201) 99970074-100016351 protein_coding
ENSMUST00000100206 (Larp4-202) 99972780-100016351 protein_coding
ENSMUSG00000045350 (Fam186a)
family with sequence similarity 186, member A 		ENSMUST00000062631 (Fam186a-002) 99918348-99931796 protein_coding
ENSMUST00000100209 (Fam186a-001) 99918353-99967075 protein_coding
ENSMUSG00000096111 (Gm21917)
predicted gene, 21917 		ENSMUST00000177831 (Gm21917-001) 99934813-99953044 antisense
ENSMUST00000179575 (Gm21917-003) 99931711-99933696 antisense
ENSMUST00000180309 (Gm21917-002) 99931711-99952552 antisense
ENSMUSG00000100084 (RP23-32P19.3)
RIKEN cDNA 2310068J16 gene 		ENSMUST00000188271 (RP23-32P19.3-001) 99972164-99973287 antisense

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000058_0001ENSG00000161813ENST00000293618ENST00000347328ENST00000398473ENST00000429001ENST00000517559ENST00000518444ENST00000518561ENST00000520064ENST00000521120ENST00000522085ENST00000523389ENST00000548174ENST00000548697ENST00000548993ENST00000550260ENST00000550522ENST00000551886ENST00000552445ENST00000614335ENST00000615080ENST00000616828ENSG00000185958ENST00000327337ENST00000539751ENST00000543096ENST00000543111ENSG00000244266ENST00000498788CIL_000058_0002ENSMUSG00000023025ENSMUST00000057632ENSMUST00000100206ENSMUSG00000045350ENSMUST00000062631ENSMUST00000100209ENSMUSG00000096111ENSMUST00000177831ENSMUST00000179575ENSMUST00000180309ENSMUSG00000100084ENSMUST00000188271
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000058_0001ENSG00000161813ENST00000293618ENST00000347328ENST00000398473ENST00000429001ENST00000518444ENST00000522085ENST00000614335ENST00000616828ENSG00000185958ENST00000327337ENST00000539751ENST00000543096ENST00000543111ENSG00000244266ENST00000498788CIL_000058_0002ENSMUSG00000023025ENSMUST00000057632ENSMUST00000100206ENSMUSG00000045350ENSMUST00000062631ENSMUST00000100209ENSMUSG00000096111ENSMUST00000177831ENSMUST00000179575ENSMUST00000180309ENSMUSG00000100084ENSMUST00000188271
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000161813 ENST00000293618 N/A N/A N/A N/A 0.965±0.00 1.289±0.00 N/A N/A 0.961±0.00 N/A N/A 4.022±0.00 N/A 0.995±0.00
ENST00000347328 N/A N/A 1.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00
ENST00000398473 3.473±0.00 0.606±0.00 1.253±0.00 1.598±0.92 2.695±0.00 3.042±1.20 3.756±1.79 9.034±1.44 5.643±1.74 6.227±2.49 2.589±0.00 4.011±2.16 1.895±0.39 2.641±1.37
ENST00000429001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.899±0.00
ENST00000517559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518444 N/A N/A 1.175±0.00 N/A 1.713±0.00 N/A N/A 4.397±0.00 N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000518561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522085 N/A N/A N/A N/A N/A N/A N/A N/A 5.823±0.00 N/A N/A N/A N/A N/A
ENST00000523389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614335 N/A N/A 2.383±0.00 N/A N/A 3.754±0.00 1.763±0.00 N/A 2.395±0.00 N/A N/A N/A N/A N/A
ENST00000615080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616828 N/A N/A N/A N/A 3.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185958 ENST00000327337 N/A N/A 0.035±0.00 0.010±0.00 0.009±0.00 N/A N/A N/A 0.012±0.00 N/A 0.019±0.00 N/A N/A N/A
ENST00000539751 N/A N/A N/A N/A 0.073±0.00 0.372±0.28 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543096 0.030±0.00 0.135±0.00 N/A 0.071±0.00 0.057±0.01 0.062±0.03 0.039±0.02 0.146±0.00 0.088±0.00 0.038±0.00 0.078±0.00 0.111±0.00 0.012±0.00 2.366±0.00
ENST00000543111 N/A 0.018±0.00 N/A 0.012±0.00 0.034±0.00 N/A 0.004±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENSG00000244266 ENST00000498788 0.129±0.00 0.101±0.00 N/A 0.103±0.00 0.167±0.00 0.094±0.00 0.054±0.02 0.168±0.00 0.030±0.00 0.063±0.00 0.266±0.00 0.245±0.21 N/A 0.174±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023025 ENSMUST00000057632 5.114±1.90 6.901±1.86 N/A N/A 5.796±2.66 7.966±1.19 3.402±0.00 5.707±2.68 5.109±2.11 7.496±1.28 N/A 10.210±4.10 N/A 2.621±0.22
ENSMUST00000100206 2.068±0.94 1.753±0.31 6.432±0.18 3.506±2.09 3.612±0.99 1.679±0.34 2.384±1.54 4.476±1.75 5.214±3.30 1.635±0.00 4.505±0.40 6.666±3.46 11.262±5.68 3.028±1.35
ENSMUSG00000045350 ENSMUST00000062631 0.283±0.00 N/A 0.110±0.00 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.826±0.56
ENSMUST00000100209 0.049±0.00 0.039±0.01 0.020±0.01 0.006±0.00 0.075±0.03 N/A 0.045±0.01 0.015±0.01 0.012±0.01 0.010±0.01 0.034±0.01 0.035±0.02 0.023±0.01 7.613±0.26
ENSMUSG00000096111 ENSMUST00000177831 N/A N/A 0.746±0.56 0.753±0.85 0.168±0.00 N/A N/A 0.073±0.00 0.440±0.40 N/A N/A 0.126±0.00 0.217±0.03 N/A
ENSMUST00000179575 0.854±0.10 N/A 0.133±0.00 0.065±0.00 N/A N/A 0.227±0.00 N/A N/A N/A N/A 0.315±0.00 0.084±0.00 N/A
ENSMUST00000180309 N/A N/A N/A N/A 0.489±0.02 N/A N/A 0.277±0.00 N/A 0.095±0.00 N/A N/A 0.134±0.00 N/A
ENSMUSG00000100084 ENSMUST00000188271 N/A 1.619±0.35 N/A N/A 1.591±0.23 N/A N/A N/A N/A N/A N/A 1.528±0.14 N/A N/A

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