C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00051T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050405-ENSG00000185958 CGP 9606 12:50175788-50396622
GeneTranscriptPositionBiotype
ENSG00000050405 (LIMA1)
LIM domain and actin binding 1 		ENST00000341247 (LIMA1-003) 50175788-50283546 protein_coding
ENST00000394943 (LIMA1-001) 50175788-50283506 protein_coding
ENST00000547825 (LIMA1-007) 50175788-50202112 protein_coding
ENST00000549064 (LIMA1-014) 50177698-50182179 retained_intron
ENST00000550592 (LIMA1-008) 50222318-50249893 protein_coding
ENST00000550611 (LIMA1-010) 50222167-50224481 processed_transcript
ENST00000551486 (LIMA1-012) 50204344-50222165 retained_intron
ENST00000551691 (LIMA1-009) 50222260-50283484 protein_coding
ENST00000552008 (LIMA1-011) 50192452-50220556 processed_transcript
ENST00000552045 (LIMA1-016) 50195618-50200892 retained_intron
ENST00000552338 (LIMA1-015) 50177774-50196047 processed_transcript
ENST00000552491 (LIMA1-017) 50175788-50200847 protein_coding
ENST00000552720 (LIMA1-005) 50177006-50283456 nonsense_mediated_decay
ENST00000552783 (LIMA1-002) 50175790-50222705 protein_coding
ENST00000552823 (LIMA1-006) 50175788-50222348 protein_coding
ENST00000552909 (LIMA1-004) 50176885-50222356 protein_coding
ENSG00000161813 (LARP4)
La ribonucleoprotein domain family, member 4 		ENST00000293618 (LARP4-201) 50400809-50479996 protein_coding
ENST00000347328 (LARP4-001) 50400985-50477497 protein_coding
ENST00000398473 (LARP4-002) 50400899-50480004 protein_coding
ENST00000429001 (LARP4-015) 50400857-50477517 protein_coding
ENST00000517559 (LARP4-008) 50401108-50435552 protein_coding
ENST00000518444 (LARP4-003) 50400929-50476463 protein_coding
ENST00000518561 (LARP4-006) 50400956-50461487 protein_coding
ENST00000520064 (LARP4-018) 50440439-50476456 protein_coding
ENST00000521120 (LARP4-009) 50440479-50454962 retained_intron
ENST00000522085 (LARP4-004) 50400908-50461487 protein_coding
ENST00000523389 (LARP4-007) 50400950-50429089 protein_coding
ENST00000548174 (LARP4-011) 50400889-50429091 protein_coding
ENST00000548697 (LARP4-013) 50400895-50429086 protein_coding
ENST00000548993 (LARP4-014) 50400896-50437785 protein_coding
ENST00000550260 (LARP4-017) 50401001-50437778 protein_coding
ENST00000550522 (LARP4-010) 50392383-50430551 protein_coding
ENST00000551886 (LARP4-016) 50400932-50435599 protein_coding
ENST00000552445 (LARP4-012) 50401193-50430565 protein_coding
ENST00000614335 (LARP4-202) 50400907-50475962 protein_coding
ENST00000615080 (LARP4-203) 50400929-50441618 protein_coding
ENST00000616828 (LARP4-204) 50400908-50461483 protein_coding
ENSG00000185958 (FAM186A)
family with sequence similarity 186, member A 		ENST00000327337 (FAM186A-002) 50327312-50396484 protein_coding
ENST00000539751 (FAM186A-003) 50327309-50334103 nonsense_mediated_decay
ENST00000543096 (FAM186A-201) 50326230-50350885 protein_coding
ENST00000543111 (FAM186A-001) 50326230-50396622 protein_coding
ENSG00000212496 (RNU6-1093P)
RNA, U6 small nuclear 1093, pseudogene 		ENST00000391194 (RNU6-1093P-201) 50256238-50256344 snRNA
ENSG00000221604 (MIR1293)
microRNA 1293 		ENST00000408677 (MIR1293-201) 50234142-50234212 miRNA
ENSG00000244266 (RP11-112N23.1)
 ENST00000498788 (RP11-112N23.1-001) 50365652-50366086 processed_pseudogene
ENSG00000257256 (RP3-405J10.4)
 ENST00000551284 (RP3-405J10.4-001) 50219604-50229984 antisense
ENSG00000257298 (RP3-405J10.3)
 ENST00000552061 (RP3-405J10.3-001) 50185580-50191363 sense_intronic
ENSG00000257531 (RP3-405J10.2)
 ENST00000548666 (RP3-405J10.2-001) 50217662-50218343 transcribed_processed_pseudogene
ENSG00000278842 (RP3-405J10.5)
 ENST00000617570 (RP3-405J10.5-001) 50286244-50289231 processed_pseudogene
CIL_00051T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023022-ENSMUSG00000045350 CGP 10090 15:99778470-99967075
GeneTranscriptPositionBiotype
ENSMUSG00000023022 (Lima1)
LIM domain and actin binding 1 		ENSMUST00000073691 (Lima1-001) 99778470-99875428 protein_coding
ENSMUST00000109024 (Lima1-003) 99778470-99820143 protein_coding
ENSMUST00000171450 (Lima1-002) 99841228-99875416 retained_intron
ENSMUST00000172119 (Lima1-004) 99781239-99783973 retained_intron
ENSMUSG00000037438 (Gm9763)
predicted pseudogene 9763 		ENSMUST00000038391 (Gm9763-201) 99898287-99898556 processed_pseudogene
ENSMUSG00000045350 (Fam186a)
family with sequence similarity 186, member A 		ENSMUST00000062631 (Fam186a-002) 99918348-99931796 protein_coding
ENSMUST00000100209 (Fam186a-001) 99918353-99967075 protein_coding
ENSMUSG00000065643 (Gm25897)
predicted gene, 25897 		ENSMUST00000083709 (Gm25897-201) 99803020-99803126 snRNA
ENSMUSG00000090406 (Gm17058)
predicted gene 17058 		ENSMUST00000168951 (Gm17058-001) 99765991-99782332 antisense
ENSMUSG00000090500 (Gm17057)
predicted gene 17057 		ENSMUST00000169887 (Gm17057-001) 99819020-99834570 antisense
ENSMUSG00000092014 (Gm4468)
predicted gene 4468 		ENSMUST00000170206 (Gm4468-001) 99810289-99810582 processed_pseudogene
ENSMUSG00000096111 (Gm21917)
predicted gene, 21917 		ENSMUST00000177831 (Gm21917-001) 99934813-99953044 antisense
ENSMUST00000179575 (Gm21917-003) 99931711-99933696 antisense
ENSMUST00000180309 (Gm21917-002) 99931711-99952552 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00051T_0001ENSG00000050405ENST00000341247ENST00000394943ENST00000547825ENST00000552491ENST00000552720ENST00000552783ENST00000552823ENST00000552909ENSG00000161813ENST00000293618ENST00000347328ENST00000398473ENST00000429001ENST00000518444ENST00000522085ENST00000614335ENST00000616828ENSG00000185958ENST00000327337ENST00000539751ENST00000543096ENST00000543111ENSG00000212496ENST00000391194ENSG00000221604ENST00000408677ENSG00000244266ENST00000498788ENSG00000257256ENST00000551284ENSG00000257298ENST00000552061ENSG00000257531ENST00000548666ENSG00000278842ENST00000617570CIL_00051T_0002ENSMUSG00000023022ENSMUST00000073691ENSMUST00000109024ENSMUSG00000037438ENSMUST00000038391ENSMUSG00000045350ENSMUST00000062631ENSMUST00000100209ENSMUSG00000065643ENSMUST00000083709ENSMUSG00000090406ENSMUST00000168951ENSMUSG00000090500ENSMUST00000169887ENSMUSG00000092014ENSMUST00000170206ENSMUSG00000096111ENSMUST00000177831ENSMUST00000179575ENSMUST00000180309
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050405 ENST00000341247 3.780±0.00 N/A N/A 0.319±0.00 5.988±3.17 9.512±3.30 2.231±0.00 3.465±3.02 1.810±0.00 5.041±2.08 N/A 6.879±2.83 8.511±3.95 4.136±1.45
ENST00000394943 N/A 3.347±0.00 N/A 0.799±0.00 N/A N/A N/A N/A 0.740±0.00 N/A 0.798±0.00 6.554±0.00 3.113±0.00 N/A
ENST00000547825 2.559±0.00 3.041±0.00 N/A 0.515±0.17 7.182±0.00 N/A 0.838±0.00 N/A 3.083±0.00 3.356±0.00 0.393±0.00 2.187±0.12 N/A N/A
ENST00000549064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552491 7.937±0.00 4.996±0.00 1.647±0.00 1.088±0.00 13.733±0.00 5.386±0.00 N/A 9.612±0.00 N/A 10.923±0.00 N/A 11.284±0.00 5.194±1.25 4.877±0.00
ENST00000552720 N/A N/A 2.674±0.00 N/A 6.131±0.00 8.289±0.00 0.320±0.00 N/A 3.489±0.00 3.465±0.00 N/A 6.121±0.00 N/A N/A
ENST00000552783 3.175±0.00 2.588±0.00 N/A 0.656±0.18 9.565±1.77 4.639±0.37 0.789±0.00 0.509±0.00 7.713±0.00 9.176±0.00 0.170±0.00 4.252±1.10 3.884±0.71 N/A
ENST00000552823 N/A N/A N/A N/A N/A N/A 1.354±0.00 4.446±0.00 1.407±0.00 N/A 0.457±0.00 4.781±1.66 8.302±2.97 3.114±0.63
ENST00000552909 N/A N/A N/A 1.255±0.00 N/A N/A 0.514±0.00 N/A N/A N/A 0.440±0.00 N/A N/A N/A
ENSG00000161813 ENST00000293618 N/A N/A N/A N/A 0.965±0.00 1.289±0.00 N/A N/A 0.961±0.00 N/A N/A 4.022±0.00 N/A 0.995±0.00
ENST00000347328 N/A N/A 1.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00
ENST00000398473 3.473±0.00 0.606±0.00 1.253±0.00 1.598±0.92 2.695±0.00 3.042±1.20 3.756±1.79 9.034±1.44 5.643±1.74 6.227±2.49 2.589±0.00 4.011±2.16 1.895±0.39 2.641±1.37
ENST00000429001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.899±0.00
ENST00000517559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518444 N/A N/A 1.175±0.00 N/A 1.713±0.00 N/A N/A 4.397±0.00 N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000518561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522085 N/A N/A N/A N/A N/A N/A N/A N/A 5.823±0.00 N/A N/A N/A N/A N/A
ENST00000523389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614335 N/A N/A 2.383±0.00 N/A N/A 3.754±0.00 1.763±0.00 N/A 2.395±0.00 N/A N/A N/A N/A N/A
ENST00000615080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616828 N/A N/A N/A N/A 3.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185958 ENST00000327337 N/A N/A 0.035±0.00 0.010±0.00 0.009±0.00 N/A N/A N/A 0.012±0.00 N/A 0.019±0.00 N/A N/A N/A
ENST00000539751 N/A N/A N/A N/A 0.073±0.00 0.372±0.28 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543096 0.030±0.00 0.135±0.00 N/A 0.071±0.00 0.057±0.01 0.062±0.03 0.039±0.02 0.146±0.00 0.088±0.00 0.038±0.00 0.078±0.00 0.111±0.00 0.012±0.00 2.366±0.00
ENST00000543111 N/A 0.018±0.00 N/A 0.012±0.00 0.034±0.00 N/A 0.004±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENSG00000212496 ENST00000391194 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221604 ENST00000408677 N/A 1.895±0.00 N/A N/A 1.421±0.00 N/A N/A N/A 2.753±0.00 N/A N/A N/A N/A N/A
ENSG00000244266 ENST00000498788 0.129±0.00 0.101±0.00 N/A 0.103±0.00 0.167±0.00 0.094±0.00 0.054±0.02 0.168±0.00 0.030±0.00 0.063±0.00 0.266±0.00 0.245±0.21 N/A 0.174±0.08
ENSG00000257256 ENST00000551284 0.048±0.00 0.234±0.00 N/A 0.051±0.00 0.247±0.06 N/A 0.084±0.00 N/A N/A 0.288±0.00 N/A 0.139±0.00 0.830±0.61 N/A
ENSG00000257298 ENST00000552061 0.501±0.00 0.507±0.00 0.520±0.00 0.063±0.05 1.054±0.08 0.734±0.58 0.086±0.03 0.120±0.03 0.333±0.27 0.398±0.10 0.093±0.02 0.254±0.16 0.095±0.05 0.227±0.05
ENSG00000257531 ENST00000548666 0.050±0.00 N/A 0.290±0.00 N/A 1.114±0.00 0.335±0.09 N/A N/A N/A 0.197±0.00 N/A 0.123±0.00 0.245±0.00 0.512±0.01
ENSG00000278842 ENST00000617570 N/A 0.019±0.00 0.497±0.00 0.091±0.00 0.061±0.04 0.580±0.00 0.006±0.00 0.072±0.00 0.094±0.00 N/A N/A 0.218±0.27 N/A 0.020±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023022 ENSMUST00000073691 7.106±3.78 5.342±1.42 14.213±0.43 2.110±1.35 3.606±0.90 48.136±3.60 1.394±0.33 13.586±0.52 5.957±3.55 9.441±0.99 0.592±0.24 4.514±1.47 17.557±10.71 1.284±0.55
ENSMUST00000109024 10.865±4.21 2.468±0.00 47.552±1.33 3.945±0.82 7.907±1.32 N/A 2.488±0.56 3.981±0.63 1.882±0.41 7.221±1.10 1.161±0.30 9.063±3.76 21.299±7.19 0.377±0.14
ENSMUST00000171450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037438 ENSMUST00000038391 N/A N/A N/A 0.087±0.01 N/A N/A N/A 0.404±0.05 0.102±0.00 N/A N/A 1.035±0.77 0.507±0.29 0.359±0.00
ENSMUSG00000045350 ENSMUST00000062631 0.283±0.00 N/A 0.110±0.00 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.826±0.56
ENSMUST00000100209 0.049±0.00 0.039±0.01 0.020±0.01 0.006±0.00 0.075±0.03 N/A 0.045±0.01 0.015±0.01 0.012±0.01 0.010±0.01 0.034±0.01 0.035±0.02 0.023±0.01 7.613±0.26
ENSMUSG00000065643 ENSMUST00000083709 N/A N/A N/A 24.353±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090406 ENSMUST00000168951 0.169±0.10 0.496±0.22 0.104±0.04 0.197±0.03 0.341±0.16 0.273±0.13 0.138±0.04 0.191±0.05 0.065±0.06 0.289±0.00 N/A 0.224±0.24 0.085±0.03 0.138±0.03
ENSMUSG00000090500 ENSMUST00000169887 0.459±0.20 N/A 0.284±0.00 0.248±0.16 0.546±0.24 0.733±0.34 0.165±0.10 0.291±0.11 0.077±0.03 0.153±0.03 0.103±0.01 0.401±0.40 0.185±0.11 0.077±0.00
ENSMUSG00000092014 ENSMUST00000170206 0.252±0.00 N/A 0.521±0.10 0.309±0.00 0.551±0.00 0.989±0.19 N/A N/A 0.097±0.04 0.255±0.00 N/A 1.545±0.62 0.700±0.51 N/A
ENSMUSG00000096111 ENSMUST00000177831 N/A N/A 0.746±0.56 0.753±0.85 0.168±0.00 N/A N/A 0.073±0.00 0.440±0.40 N/A N/A 0.126±0.00 0.217±0.03 N/A
ENSMUST00000179575 0.854±0.10 N/A 0.133±0.00 0.065±0.00 N/A N/A 0.227±0.00 N/A N/A N/A N/A 0.315±0.00 0.084±0.00 N/A
ENSMUST00000180309 N/A N/A N/A N/A 0.489±0.02 N/A N/A 0.277±0.00 N/A 0.095±0.00 N/A N/A 0.134±0.00 N/A

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