C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006DT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161813-ENSG00000066084 CGP 9606 12:50392383-50748667
GeneTranscriptPositionBiotype
ENSG00000066084 (DIP2B)
DIP2 disco-interacting protein 2 homolog B (Drosophila) 		ENST00000301180 (DIP2B-002) 50505107-50748667 protein_coding
ENST00000546719 (DIP2B-004) 50640805-50680282 retained_intron
ENST00000546732 (DIP2B-001) 50685886-50745095 nonsense_mediated_decay
ENST00000549620 (DIP2B-003) 50504985-50680282 retained_intron
ENST00000552328 (DIP2B-005) 50685848-50686892 retained_intron
ENSG00000161813 (LARP4)
La ribonucleoprotein domain family, member 4 		ENST00000293618 (LARP4-201) 50400809-50479996 protein_coding
ENST00000347328 (LARP4-001) 50400985-50477497 protein_coding
ENST00000398473 (LARP4-002) 50400899-50480004 protein_coding
ENST00000429001 (LARP4-015) 50400857-50477517 protein_coding
ENST00000517559 (LARP4-008) 50401108-50435552 protein_coding
ENST00000518444 (LARP4-003) 50400929-50476463 protein_coding
ENST00000518561 (LARP4-006) 50400956-50461487 protein_coding
ENST00000520064 (LARP4-018) 50440439-50476456 protein_coding
ENST00000521120 (LARP4-009) 50440479-50454962 retained_intron
ENST00000522085 (LARP4-004) 50400908-50461487 protein_coding
ENST00000523389 (LARP4-007) 50400950-50429089 protein_coding
ENST00000548174 (LARP4-011) 50400889-50429091 protein_coding
ENST00000548697 (LARP4-013) 50400895-50429086 protein_coding
ENST00000548993 (LARP4-014) 50400896-50437785 protein_coding
ENST00000550260 (LARP4-017) 50401001-50437778 protein_coding
ENST00000550522 (LARP4-010) 50392383-50430551 protein_coding
ENST00000551886 (LARP4-016) 50400932-50435599 protein_coding
ENST00000552445 (LARP4-012) 50401193-50430565 protein_coding
ENST00000614335 (LARP4-202) 50400907-50475962 protein_coding
ENST00000615080 (LARP4-203) 50400929-50441618 protein_coding
ENST00000616828 (LARP4-204) 50400908-50461483 protein_coding
ENSG00000185958 (FAM186A)
family with sequence similarity 186, member A 		ENST00000327337 (FAM186A-002) 50327312-50396484 protein_coding
ENST00000539751 (FAM186A-003) 50327309-50334103 nonsense_mediated_decay
ENST00000543096 (FAM186A-201) 50326230-50350885 protein_coding
ENST00000543111 (FAM186A-001) 50326230-50396622 protein_coding
ENSG00000200183 (RNU6-238P)
RNA, U6 small nuclear 238, pseudogene 		ENST00000363313 (RNU6-238P-201) 50656973-50657078 snRNA
ENSG00000200428 (Y_RNA)
Y RNA 		ENST00000363558 (Y_RNA.1-349) 50743568-50743684 misc_RNA
ENSG00000207136 (RNU6-769P)
RNA, U6 small nuclear 769, pseudogene 		ENST00000384407 (RNU6-769P-201) 50633273-50633376 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006DT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023025-ENSMUSG00000023026 CGP 10090 15:99970074-100219473
GeneTranscriptPositionBiotype
ENSMUSG00000023025 (Larp4)
La ribonucleoprotein domain family, member 4 		ENSMUST00000057632 (Larp4-201) 99970074-100016351 protein_coding
ENSMUST00000100206 (Larp4-202) 99972780-100016351 protein_coding
ENSMUSG00000023026 (Dip2b)
DIP2 disco-interacting protein 2 homolog B (Drosophila) 		ENSMUST00000023768 (Dip2b-002) 100154396-100215666 protein_coding
ENSMUST00000100203 (Dip2b-001) 100038664-100219473 protein_coding
ENSMUST00000108971 (Dip2b-201) 100154396-100219473 protein_coding
ENSMUST00000135658 (Dip2b-003) 100203136-100205629 processed_transcript
ENSMUSG00000100084 (RP23-32P19.3)
RIKEN cDNA 2310068J16 gene 		ENSMUST00000188271 (RP23-32P19.3-001) 99972164-99973287 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DT_0001ENSG00000066084ENST00000301180ENST00000546732ENST00000549620ENSG00000161813ENST00000293618ENST00000347328ENST00000398473ENST00000429001ENST00000518444ENST00000522085ENST00000614335ENST00000616828ENSG00000185958ENST00000327337ENST00000539751ENST00000543096ENST00000543111ENSG00000200183ENST00000363313ENSG00000200428ENST00000363558ENSG00000207136ENST00000384407CIL_0006DT_0002ENSMUSG00000023025ENSMUST00000057632ENSMUST00000100206ENSMUSG00000023026ENSMUST00000023768ENSMUST00000100203ENSMUST00000108971ENSMUSG00000100084ENSMUST00000188271
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066084 ENST00000301180 2.902±0.00 1.687±0.00 2.294±0.00 10.696±0.79 3.633±2.30 1.748±0.23 2.574±0.00 1.733±0.97 1.427±0.02 0.709±0.00 1.131±0.23 6.341±5.20 3.647±0.66 2.950±0.05
ENST00000546719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.189±0.00 2.126±0.00 3.187±0.00
ENST00000549620 N/A N/A N/A N/A N/A 2.429±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000161813 ENST00000293618 N/A N/A N/A N/A 0.965±0.00 1.289±0.00 N/A N/A 0.961±0.00 N/A N/A 4.022±0.00 N/A 0.995±0.00
ENST00000347328 N/A N/A 1.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.034±0.00
ENST00000398473 3.473±0.00 0.606±0.00 1.253±0.00 1.598±0.92 2.695±0.00 3.042±1.20 3.756±1.79 9.034±1.44 5.643±1.74 6.227±2.49 2.589±0.00 4.011±2.16 1.895±0.39 2.641±1.37
ENST00000429001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.899±0.00
ENST00000517559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518444 N/A N/A 1.175±0.00 N/A 1.713±0.00 N/A N/A 4.397±0.00 N/A N/A 1.548±0.00 N/A N/A N/A
ENST00000518561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522085 N/A N/A N/A N/A N/A N/A N/A N/A 5.823±0.00 N/A N/A N/A N/A N/A
ENST00000523389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614335 N/A N/A 2.383±0.00 N/A N/A 3.754±0.00 1.763±0.00 N/A 2.395±0.00 N/A N/A N/A N/A N/A
ENST00000615080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616828 N/A N/A N/A N/A 3.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185958 ENST00000327337 N/A N/A 0.035±0.00 0.010±0.00 0.009±0.00 N/A N/A N/A 0.012±0.00 N/A 0.019±0.00 N/A N/A N/A
ENST00000539751 N/A N/A N/A N/A 0.073±0.00 0.372±0.28 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543096 0.030±0.00 0.135±0.00 N/A 0.071±0.00 0.057±0.01 0.062±0.03 0.039±0.02 0.146±0.00 0.088±0.00 0.038±0.00 0.078±0.00 0.111±0.00 0.012±0.00 2.366±0.00
ENST00000543111 N/A 0.018±0.00 N/A 0.012±0.00 0.034±0.00 N/A 0.004±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENSG00000200183 ENST00000363313 N/A 0.407±0.00 N/A 0.207±0.00 0.598±0.00 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200428 ENST00000363558 N/A 0.338±0.00 N/A 0.426±0.00 N/A N/A N/A N/A N/A 0.619±0.00 N/A 0.984±0.00 N/A 1.031±0.09
ENSG00000207136 ENST00000384407 N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023025 ENSMUST00000057632 5.114±1.90 6.901±1.86 N/A N/A 5.796±2.66 7.966±1.19 3.402±0.00 5.707±2.68 5.109±2.11 7.496±1.28 N/A 10.210±4.10 N/A 2.621±0.22
ENSMUST00000100206 2.068±0.94 1.753±0.31 6.432±0.18 3.506±2.09 3.612±0.99 1.679±0.34 2.384±1.54 4.476±1.75 5.214±3.30 1.635±0.00 4.505±0.40 6.666±3.46 11.262±5.68 3.028±1.35
ENSMUSG00000023026 ENSMUST00000023768 N/A N/A N/A 2.676±0.00 N/A N/A N/A N/A 0.359±0.00 1.833±0.00 N/A 2.017±0.61 3.555±1.29 8.087±0.64
ENSMUST00000100203 0.905±0.23 3.193±0.96 3.965±0.91 10.085±2.45 5.525±2.84 3.743±0.63 1.311±0.37 1.463±0.61 0.816±0.46 6.028±2.27 0.527±0.25 3.290±1.56 4.607±1.45 2.681±0.79
ENSMUST00000108971 1.067±0.11 1.778±0.06 1.667±0.00 3.467±1.26 0.987±0.12 1.486±0.21 N/A 0.615±0.16 0.513±0.17 2.448±0.80 0.307±0.08 2.019±0.91 1.557±0.66 1.398±0.62
ENSMUST00000135658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100084 ENSMUST00000188271 N/A 1.619±0.35 N/A N/A 1.591±0.23 N/A N/A N/A N/A N/A N/A 1.528±0.14 N/A N/A

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