C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 25kDa (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161981 SNRNP25 9606 + 16:53010-57669 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293861 SNRNP25-001 53010-57669 protein_coding
  ENST00000383018 SNRNP25-201 53829-57668 protein_coding
  ENST00000397876 SNRNP25-004 53887-57372 nonsense_mediated_decay
  ENST00000417493 SNRNP25-006 53899-56613 protein_coding
  ENST00000466183 SNRNP25-002 54960-57444 retained_intron
  ENST00000481947 SNRNP25-005 55495-57453 retained_intron
  ENST00000493672 SNRNP25-007 53899-55871 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293861ENST00000383018ENST00000397876ENST00000417493ENST00000466183ENST00000481947ENST00000493672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293861 1.803±0.00 5.797±0.00 N/A 3.176±1.44 1.435±1.09 0.249±0.00 N/A 4.062±0.00 0.288±0.00 N/A N/A 1.110±0.93 1.784±0.00 1.503±0.00
ENST00000383018 1.094±0.00 N/A N/A 10.443±5.20 9.459±0.00 5.583±0.00 6.715±5.52 5.484±4.09 2.878±2.27 4.452±0.00 5.686±3.19 14.959±7.41 7.992±2.77 5.040±0.89
ENST00000397876 2.632±0.00 6.423±0.00 0.611±0.00 16.717±0.00 N/A 6.385±0.00 17.669±0.00 6.429±0.00 8.877±0.00 5.114±0.00 17.769±0.00 4.835±0.00 5.982±0.00 4.897±0.19
ENST00000417493 N/A N/A 1.668±0.00 7.467±0.00 N/A 1.898±0.00 18.091±0.00 N/A N/A N/A N/A N/A N/A 9.209±0.00
ENST00000466183 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.349±0.00 1.850±0.00 N/A 2.580±0.00 N/A
ENST00000481947 N/A N/A N/A N/A N/A N/A N/A 1.246±0.00 N/A N/A N/A N/A N/A N/A
ENST00000493672 N/A N/A N/A N/A 2.077±0.00 N/A 3.745±0.00 2.828±0.00 N/A N/A 8.522±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020363 snrnp25 small nuclear ribonucleoprotein 25 protein_coding Danio_rerio
ENSMUSG00000040767 Snrnp25 small nuclear ribonucleoprotein 25 (U11/U12) protein_coding Mus_musculus

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