C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 25 (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040767 Snrnp25 10090 + 11:32205415-32208984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039601 Snrnp25-001 32205415-32208984 protein_coding
  ENSMUST00000121182 Snrnp25-005 32205488-32208873 protein_coding
  ENSMUST00000125837 Snrnp25-002 32206762-32208984 retained_intron
  ENSMUST00000149043 Snrnp25-003 32205446-32208408 protein_coding
  ENSMUST00000155736 Snrnp25-004 32205458-32207651 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039601ENSMUST00000121182ENSMUST00000125837ENSMUST00000149043ENSMUST00000155736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039601 6.353±2.21 0.878±0.42 10.798±0.16 17.874±5.92 4.191±1.37 9.758±1.77 4.444±1.08 5.842±0.58 22.922±27.09 5.084±1.19 5.548±0.77 7.167±2.48 20.339±7.91 16.031±1.20
ENSMUST00000121182 N/A N/A N/A 16.947±0.00 1.460±0.00 N/A N/A N/A N/A N/A N/A 4.766±0.00 6.790±0.99 N/A
ENSMUST00000125837 N/A N/A N/A N/A 1.966±0.00 N/A N/A N/A N/A 1.320±0.00 N/A N/A N/A N/A
ENSMUST00000149043 2.626±0.68 0.955±0.35 N/A N/A 2.063±0.01 3.625±0.00 1.499±0.07 3.255±0.33 1.107±0.46 2.412±0.59 N/A 5.535±2.90 N/A 6.564±0.87
ENSMUST00000155736 4.506±0.55 2.553±0.36 N/A N/A 4.578±1.39 14.250±2.88 N/A 2.852±0.60 1.037±0.33 5.860±0.00 N/A 7.110±3.40 N/A 10.474±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0045171 IEA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020363 snrnp25 small nuclear ribonucleoprotein 25 protein_coding Danio_rerio
ENSG00000161981 SNRNP25 small nuclear ribonucleoprotein 25kDa (U11/U12) protein_coding Homo_sapiens

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