C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 25kDa (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383018 SNRNP25-201 ENSG00000161981 9606 + 16:53829-57668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383018
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383018 1.094±0.00 10.443±5.20 9.459±0.00 5.583±0.00 6.715±5.52 5.484±4.09 2.878±2.27 4.452±0.00 5.686±3.19 14.959±7.41 7.992±2.77 5.040±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing
GO:0045171 IDA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039601 Snrnp25-001 protein_coding Mus_musculus 0 514
ENSMUST00000121182 Snrnp25-005 protein_coding Mus_musculus 0 418
ENSMUST00000125837 Snrnp25-002 retained_intron Mus_musculus 0 394
ENSMUST00000149043 Snrnp25-003 protein_coding Mus_musculus 0 322
ENSMUST00000155736 Snrnp25-004 processed_transcript Mus_musculus 0 268

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