C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 25kDa (U11/U12)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397876 SNRNP25-004 ENSG00000161981 9606 + 16:53887-57372 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397876
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397876 2.632±0.00 6.423±0.00 0.611±0.00 16.717±0.00 6.385±0.00 17.669±0.00 6.429±0.00 8.877±0.00 5.114±0.00 17.769±0.00 4.835±0.00 5.982±0.00 4.897±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121182 Snrnp25-005 protein_coding Mus_musculus 0 375
ENSMUST00000039601 Snrnp25-001 protein_coding Mus_musculus 0 372
ENSMUST00000155736 Snrnp25-004 processed_transcript Mus_musculus 0 268
ENSMUST00000125837 Snrnp25-002 retained_intron Mus_musculus 0 252
ENSMUST00000149043 Snrnp25-003 protein_coding Mus_musculus 0 250

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