C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162236 STX5 9606 - 11:62806897-62832088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294179 STX5-001 62806897-62832088 protein_coding
  ENST00000377897 STX5-002 62806897-62832041 protein_coding
  ENST00000394690 STX5-005 62806925-62832042 protein_coding
  ENST00000431400 STX5-007 62823915-62825526 protein_coding
  ENST00000486437 STX5-006 62827577-62832051 nonsense_mediated_decay
  ENST00000488303 STX5-008 62825487-62832051 nonsense_mediated_decay
  ENST00000491231 STX5-004 62806937-62832042 nonsense_mediated_decay
  ENST00000492066 STX5-003 62806936-62832031 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294179ENST00000377897ENST00000394690ENST00000431400ENST00000488303ENST00000491231ENST00000492066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294179 13.221±0.00 11.943±0.00 N/A 4.353±3.88 14.973±0.00 10.376±0.00 3.606±0.00 8.551±0.00 5.734±0.00 5.784±5.44 2.862±0.00 21.846±8.67 21.680±0.16 11.870±8.97
ENST00000377897 N/A N/A N/A N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000394690 N/A 2.880±0.00 N/A 4.879±0.00 N/A 2.826±0.00 1.889±0.00 4.338±3.11 4.092±3.14 12.682±0.00 3.809±3.56 8.550±4.09 14.787±3.71 9.543±3.77
ENST00000431400 N/A N/A 1.310±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.878±0.00 32.520±0.00 17.059±0.00
ENST00000488303 N/A N/A N/A 2.080±0.00 1.730±0.00 1.986±0.00 N/A 3.714±0.00 2.186±0.00 N/A N/A N/A N/A N/A
ENST00000491231 N/A N/A 0.463±0.00 N/A N/A N/A 1.803±0.00 N/A N/A N/A N/A 3.652±0.00 N/A 2.756±0.00
ENST00000492066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.203±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005484 IDA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0006903 TAS vesicle targeting
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 TAS SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0047485 IPI protein N-terminus binding
GO:0048280 IEA vesicle fusion with Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003175 stx5al syntaxin 5A, like protein_coding Danio_rerio
ENSDARG00000025033 stx5a syntaxin 5A protein_coding Danio_rerio
ENSMUSG00000010110 Stx5a syntaxin 5A protein_coding Mus_musculus

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