C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 5A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010110 Stx5a 10090 + 19:8741413-8756069 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010254 Stx5a-004 8741489-8755642 protein_coding
  ENSMUST00000073430 Stx5a-002 8741803-8755642 protein_coding
  ENSMUST00000175642 Stx5a-011 8741470-8742670 retained_intron
  ENSMUST00000175834 Stx5a-017 8748590-8749378 retained_intron
  ENSMUST00000175872 Stx5a-006 8741488-8755602 nonsense_mediated_decay
  ENSMUST00000175901 Stx5a-013 8741807-8749772 protein_coding
  ENSMUST00000176009 Stx5a-015 8742860-8749119 retained_intron
  ENSMUST00000176013 Stx5a-003 8741888-8755642 nonsense_mediated_decay
  ENSMUST00000176093 Stx5a-010 8741512-8744526 retained_intron
  ENSMUST00000176182 Stx5a-016 8748503-8755058 retained_intron
  ENSMUST00000176260 Stx5a-014 8742144-8748888 retained_intron
  ENSMUST00000176314 Stx5a-012 8741669-8742860 protein_coding
  ENSMUST00000176381 Stx5a-001 8741413-8756069 protein_coding
  ENSMUST00000176404 Stx5a-009 8748533-8754984 retained_intron
  ENSMUST00000176570 Stx5a-019 8749399-8750094 protein_coding
  ENSMUST00000176844 Stx5a-008 8748518-8749713 retained_intron
  ENSMUST00000176968 Stx5a-018 8749003-8755065 protein_coding
  ENSMUST00000177322 Stx5a-005 8741413-8755586 nonsense_mediated_decay
  ENSMUST00000177373 Stx5a-007 8741479-8755123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010254ENSMUST00000073430ENSMUST00000176013ENSMUST00000176093ENSMUST00000176182ENSMUST00000176260ENSMUST00000176381ENSMUST00000176404ENSMUST00000176968ENSMUST00000177322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010254 N/A 9.590±1.02 N/A 3.242±0.00 8.419±0.00 9.319±1.41 N/A N/A 6.369±1.10 9.336±1.16 2.245±0.44 16.345±5.02 14.349±8.38 N/A
ENSMUST00000073430 32.529±6.71 17.552±2.27 21.601±2.10 11.012±6.26 20.329±2.18 18.860±2.98 7.515±1.61 16.297±1.71 13.962±2.88 18.793±2.15 4.340±1.23 25.290±10.56 30.132±10.69 20.098±9.34
ENSMUST00000176013 N/A 11.119±0.00 N/A N/A N/A 11.289±4.75 N/A N/A N/A 6.803±0.00 N/A 11.799±1.74 N/A N/A
ENSMUST00000176093 N/A N/A N/A 2.288±1.04 N/A N/A N/A N/A N/A N/A 0.847±0.03 8.611±0.06 1.486±0.00 0.779±0.00
ENSMUST00000176182 N/A N/A N/A 18.577±0.00 N/A N/A N/A N/A N/A N/A N/A 58.407±0.00 42.309±11.68 15.679±0.00
ENSMUST00000176260 N/A 26.707±6.38 N/A N/A 26.456±1.43 20.936±4.23 N/A N/A N/A 17.983±1.74 N/A 37.361±6.50 N/A N/A
ENSMUST00000176381 8.578±2.47 N/A 9.672±0.82 6.216±1.50 N/A 6.622±0.36 3.273±0.60 6.757±0.82 6.732±1.26 8.416±1.23 1.445±0.01 6.074±0.00 10.853±0.24 5.205±0.34
ENSMUST00000176404 N/A N/A N/A 22.294±0.00 N/A N/A N/A N/A N/A N/A N/A 59.014±0.00 39.417±9.76 18.365±0.00
ENSMUST00000176968 N/A N/A N/A 11.766±2.78 14.706±3.70 N/A N/A N/A N/A N/A 2.494±0.00 20.741±2.41 N/A N/A
ENSMUST00000177322 N/A N/A N/A N/A N/A N/A N/A N/A 6.819±0.00 N/A 2.856±0.56 N/A 7.344±3.60 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005484 IEA SNAP receptor activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0016021 IEA integral component of membrane
GO:0016192 TAS vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0047485 IEA protein N-terminus binding
GO:0048280 IEA vesicle fusion with Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003175 stx5al syntaxin 5A, like protein_coding Danio_rerio
ENSDARG00000025033 stx5a syntaxin 5A protein_coding Danio_rerio
ENSG00000162236 STX5 syntaxin 5 protein_coding Homo_sapiens

Loading