C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488303 STX5-008 ENSG00000162236 9606 - 11:62825487-62832051 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverENST00000488303
Transcript ID Brain Breast Colon Kidney Liver
ENST00000488303 2.080±0.00 1.730±0.00 1.986±0.00 3.714±0.00 2.186±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175901 Stx5a-013 protein_coding Mus_musculus 0 326
ENSMUST00000073430 Stx5a-002 protein_coding Mus_musculus 0 326
ENSMUST00000010254 Stx5a-004 protein_coding Mus_musculus 0 326
ENSMUST00000175872 Stx5a-006 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000176381 Stx5a-001 protein_coding Mus_musculus 0 326
ENSMUST00000177373 Stx5a-007 protein_coding Mus_musculus 0 324
ENSMUST00000176009 Stx5a-015 retained_intron Mus_musculus 0 309
ENSMUST00000177322 Stx5a-005 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000176013 Stx5a-003 nonsense_mediated_decay Mus_musculus 0 257
ENSMUST00000176260 Stx5a-014 retained_intron Mus_musculus 4.2039e-45 185
ENSMUST00000176093 Stx5a-010 retained_intron Mus_musculus 2e-28 130
ENSMUST00000175642 Stx5a-011 retained_intron Mus_musculus 2e-28 130
ENSMUST00000176314 Stx5a-012 protein_coding Mus_musculus 6e-28 128

Loading