C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000294179 STX5-001 ENSG00000162236 9606 - 11:62806897-62832088 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294179
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294179 13.221±0.00 11.943±0.00 4.353±3.88 14.973±0.00 10.376±0.00 3.606±0.00 8.551±0.00 5.734±0.00 5.784±5.44 2.862±0.00 21.846±8.67 21.680±0.16 11.870±8.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005484 IDA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0006903 TAS vesicle targeting
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 TAS SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0047485 IPI protein N-terminus binding
GO:0048280 IEA vesicle fusion with Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176381 Stx5a-001 protein_coding Mus_musculus 0 1703
ENSMUST00000073430 Stx5a-002 protein_coding Mus_musculus 0 1679
ENSMUST00000175872 Stx5a-006 nonsense_mediated_decay Mus_musculus 0 1594
ENSMUST00000177322 Stx5a-005 nonsense_mediated_decay Mus_musculus 0 1251
ENSMUST00000010254 Stx5a-004 protein_coding Mus_musculus 0 1153
ENSMUST00000176013 Stx5a-003 nonsense_mediated_decay Mus_musculus 0 1105
ENSMUST00000177373 Stx5a-007 protein_coding Mus_musculus 0 1101
ENSMUST00000175901 Stx5a-013 protein_coding Mus_musculus 0 961
ENSMUST00000176182 Stx5a-016 retained_intron Mus_musculus 0 651
ENSMUST00000176968 Stx5a-018 protein_coding Mus_musculus 0 512
ENSMUST00000176009 Stx5a-015 retained_intron Mus_musculus 0 472
ENSMUST00000176260 Stx5a-014 retained_intron Mus_musculus 0 462
ENSMUST00000176404 Stx5a-009 retained_intron Mus_musculus 0 457
ENSMUST00000176314 Stx5a-012 protein_coding Mus_musculus 0 344
ENSMUST00000175642 Stx5a-011 retained_intron Mus_musculus 0 329
ENSMUST00000176093 Stx5a-010 retained_intron Mus_musculus 0 327
ENSMUST00000176570 Stx5a-019 protein_coding Mus_musculus 0 270

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