C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491231 STX5-004 ENSG00000162236 9606 - 11:62806937-62832042 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartOvaryTestisENST00000491231
Transcript ID Bladder Heart Ovary Testis
ENST00000491231 0.463±0.00 1.803±0.00 3.652±0.00 2.756±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175872 Stx5a-006 nonsense_mediated_decay Mus_musculus 0 1637
ENSMUST00000176381 Stx5a-001 protein_coding Mus_musculus 0 1589
ENSMUST00000073430 Stx5a-002 protein_coding Mus_musculus 0 1587
ENSMUST00000177322 Stx5a-005 nonsense_mediated_decay Mus_musculus 0 1206
ENSMUST00000010254 Stx5a-004 protein_coding Mus_musculus 0 1107
ENSMUST00000177373 Stx5a-007 protein_coding Mus_musculus 0 1057
ENSMUST00000176013 Stx5a-003 nonsense_mediated_decay Mus_musculus 0 1013
ENSMUST00000175901 Stx5a-013 protein_coding Mus_musculus 0 915
ENSMUST00000176182 Stx5a-016 retained_intron Mus_musculus 0 604
ENSMUST00000176968 Stx5a-018 protein_coding Mus_musculus 0 512
ENSMUST00000176009 Stx5a-015 retained_intron Mus_musculus 0 472
ENSMUST00000176260 Stx5a-014 retained_intron Mus_musculus 0 462
ENSMUST00000176404 Stx5a-009 retained_intron Mus_musculus 0 411
ENSMUST00000176314 Stx5a-012 protein_coding Mus_musculus 0 344
ENSMUST00000175642 Stx5a-011 retained_intron Mus_musculus 0 329
ENSMUST00000176093 Stx5a-010 retained_intron Mus_musculus 0 327
ENSMUST00000176570 Stx5a-019 protein_coding Mus_musculus 0 270

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