C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162244 RPL29 9606 - 3:51993600-51995942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294189 RPL29-001 51993600-51995942 protein_coding
  ENST00000466397 RPL29-005 51993628-51995863 protein_coding
  ENST00000475248 RPL29-008 51993723-51995815 protein_coding
  ENST00000479017 RPL29-009 51993629-51995830 protein_coding
  ENST00000480306 RPL29-004 51993628-51995881 nonsense_mediated_decay
  ENST00000481629 RPL29-003 51994297-51995881 protein_coding
  ENST00000486565 RPL29-002 51994935-51995895 retained_intron
  ENST00000492277 RPL29-007 51993750-51995814 protein_coding
  ENST00000495383 RPL29-006 51993629-51995844 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294189ENST00000475248ENST00000479017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294189 544.829±0.00 614.612±0.00 100.925±0.00 90.345±16.12 279.078±142.60 403.009±244.23 52.310±4.22 186.885±31.80 131.317±9.27 168.561±73.56 314.454±49.46 260.100±237.38 222.610±158.20 204.599±192.55
ENST00000475248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.155±0.00 N/A N/A
ENST00000479017 N/A N/A N/A N/A N/A N/A 92.618±0.00 43.236±0.00 98.208±0.00 442.010±0.00 390.726±0.00 330.247±298.30 252.228±183.96 14.828±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007566 TAS embryo implantation
GO:0008201 IEA heparin binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077717 RPL29 ribosomal protein L29 protein_coding Danio_rerio
ENSMUSG00000048758 Rpl29 ribosomal protein L29 protein_coding Mus_musculus
ENSMUSG00000056797 Gm4889 predicted gene 4889 protein_coding Mus_musculus
ENSMUSG00000074516 Gm10709 predicted gene 10709 protein_coding Mus_musculus
ENSMUSG00000078240 Gm3550 predicted gene 3550 protein_coding Mus_musculus
ENSMUSG00000091198 Gm5218 predicted gene 5218 protein_coding Mus_musculus
ENSMUSG00000091695 Gm17669 predicted gene, 17669 protein_coding Mus_musculus

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