C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479017 RPL29-009 ENSG00000162244 9606 - 3:51993629-51995830 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000479017
Transcript ID Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000479017 92.618±0.00 43.236±0.00 98.208±0.00 442.010±0.00 390.726±0.00 330.247±298.30 252.228±183.96 14.828±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007566 TAS embryo implantation
GO:0008201 IEA heparin binding
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 414
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 409
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 398
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 379
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 370
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 361
ENSMUST00000147424 4931440P22Rik-003 processed_transcript Mus_musculus 0 359
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 351
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 344
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 329
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 329
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 302
ENSMUST00000120582 Gm15467-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 0 231
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 0 207
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 3.00004e-41 172
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 4e-25 119

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