C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TM2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162604 TM2D1 9606 - 1:61681046-61725423 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294613 TM2D1-201 61681047-61725423 protein_coding
  ENST00000371177 TM2D1-007 61697509-61725133 protein_coding
  ENST00000371178 TM2D1-008 61694154-61725120 retained_intron
  ENST00000371180 TM2D1-001 61681049-61725423 protein_coding
  ENST00000468586 TM2D1-005 61683497-61725067 nonsense_mediated_decay
  ENST00000472357 TM2D1-010 61681048-61683857 retained_intron
  ENST00000472989 TM2D1-011 61683272-61709418 processed_transcript
  ENST00000488206 TM2D1-003 61681245-61725113 nonsense_mediated_decay
  ENST00000488410 TM2D1-006 61683452-61696241 processed_transcript
  ENST00000494926 TM2D1-004 61694697-61725050 nonsense_mediated_decay
  ENST00000496465 TM2D1-002 61694698-61725144 nonsense_mediated_decay
  ENST00000606498 TM2D1-012 61681046-61725141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294613ENST00000371177ENST00000468586ENST00000472989ENST00000488206ENST00000488410ENST00000494926ENST00000496465ENST00000606498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294613 1.010±0.00 7.752±0.00 1.699±0.00 8.507±2.76 7.969±0.00 5.614±0.00 4.113±1.17 5.814±2.01 2.931±0.03 7.194±0.36 2.882±0.00 8.940±1.52 9.326±0.67 7.660±3.34
ENST00000371177 0.331±0.00 2.191±0.00 N/A N/A 1.209±0.00 1.388±0.00 0.644±0.00 0.578±0.00 N/A N/A 0.090±0.00 1.113±0.08 N/A 1.196±0.00
ENST00000468586 N/A N/A N/A N/A N/A N/A N/A 1.972±0.00 3.692±0.00 N/A N/A N/A 6.235±0.00 N/A
ENST00000472989 N/A N/A 2.588±0.00 13.937±0.00 4.468±0.00 2.094±0.00 N/A N/A 8.277±0.00 N/A 3.216±0.00 N/A N/A N/A
ENST00000488206 N/A N/A N/A 5.041±0.00 N/A 2.495±0.00 3.158±0.00 N/A N/A N/A 3.855±0.00 11.924±0.00 N/A 5.410±0.00
ENST00000488410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.171±0.00 N/A N/A N/A
ENST00000494926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.488±0.00
ENST00000496465 N/A N/A N/A 18.454±0.00 N/A N/A 8.742±0.00 N/A N/A N/A N/A N/A 7.406±0.00 N/A
ENST00000606498 2.033±0.00 N/A N/A 6.548±0.00 N/A 2.359±0.00 N/A 5.122±0.00 1.829±0.00 N/A 1.041±0.00 7.044±0.00 5.760±0.00 7.675±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NA CIL_0001NA_0001 CGP 1:60865259-61725423
CIL_0008LM CIL_0008LM_0001 VISTA 1:61152123-61754518
CIL_00085K CIL_00085K_0001 VISTA 1:61279788-61882487
CIL_00094S CIL_00094S_0001 VISTA 1:61287761-61890236
CIL_0002G1 CIL_0002G1_0001 CGP 1:61681046-62163920

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0004930 IEA G-protein coupled receptor activity
GO:0005887 IEA integral component of plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0097190 IEA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057042 tm2d1 TM2 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000028563 Tm2d1 TM2 domain containing 1 protein_coding Mus_musculus

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