C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TM2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488206 TM2D1-003 ENSG00000162604 9606 - 1:61681245-61725113 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartMuscleOvaryTestisENST00000488206
Transcript ID Brain Colon Heart Muscle Ovary Testis
ENST00000488206 5.041±0.00 2.495±0.00 3.158±0.00 3.855±0.00 11.924±0.00 5.410±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NA CIL_0001NA_0001 CGP 1:60865259-61725423
CIL_0008LM CIL_0008LM_0001 VISTA 1:61152123-61754518
CIL_00085K CIL_00085K_0001 VISTA 1:61279788-61882487
CIL_00094S CIL_00094S_0001 VISTA 1:61287761-61890236
CIL_0002G1 CIL_0002G1_0001 CGP 1:61681046-62163920

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102793 Tm2d1-001 protein_coding Mus_musculus 0 643
ENSMUST00000172604 Gm18284-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000030292 Tm2d1-002 protein_coding Mus_musculus 0 562
ENSMUST00000107051 Tm2d1-003 protein_coding Mus_musculus 0 555
ENSMUST00000125034 Tm2d1-005 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000143116 Tm2d1-004 protein_coding Mus_musculus 0 302
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000008 66

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