C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008LM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1309 VISTA 9606 1:61152123-61754518
GeneTranscriptPositionBiotype
ENSG00000162599 (NFIA)
nuclear factor I/A 		ENST00000357977 (NFIA-008) 61404076-61458037 protein_coding
ENST00000371184 (NFIA-006) 61082754-61455487 protein_coding
ENST00000371185 (NFIA-005) 61082748-61455526 protein_coding
ENST00000371187 (NFIA-003) 61082621-61456394 protein_coding
ENST00000371189 (NFIA-015) 61081862-61455562 protein_coding
ENST00000371191 (NFIA-002) 60865259-61455525 protein_coding
ENST00000403491 (NFIA-001) 61082308-61462793 protein_coding
ENST00000407417 (NFIA-014) 61077274-61455585 protein_coding
ENST00000476646 (NFIA-013) 61053830-61332586 protein_coding
ENST00000479364 (NFIA-009) 61081767-61406727 processed_transcript
ENST00000482020 (NFIA-010) 61352450-61404226 protein_coding
ENST00000485903 (NFIA-007) 61082723-61455524 protein_coding
ENST00000493627 (NFIA-011) 61406672-61455874 protein_coding
ENST00000496712 (NFIA-012) 61088412-61133028 protein_coding
ENSG00000162604 (TM2D1)
TM2 domain containing 1 		ENST00000294613 (TM2D1-201) 61681047-61725423 protein_coding
ENST00000371177 (TM2D1-007) 61697509-61725133 protein_coding
ENST00000371178 (TM2D1-008) 61694154-61725120 retained_intron
ENST00000371180 (TM2D1-001) 61681049-61725423 protein_coding
ENST00000468586 (TM2D1-005) 61683497-61725067 nonsense_mediated_decay
ENST00000472357 (TM2D1-010) 61681048-61683857 retained_intron
ENST00000472989 (TM2D1-011) 61683272-61709418 processed_transcript
ENST00000488206 (TM2D1-003) 61681245-61725113 nonsense_mediated_decay
ENST00000488410 (TM2D1-006) 61683452-61696241 processed_transcript
ENST00000494926 (TM2D1-004) 61694697-61725050 nonsense_mediated_decay
ENST00000496465 (TM2D1-002) 61694698-61725144 nonsense_mediated_decay
ENST00000606498 (TM2D1-012) 61681046-61725141 protein_coding
ENSG00000223920 (MGC34796)
sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene 		ENST00000416440 (MGC34796-001) 61654194-61654908 processed_pseudogene
ENSG00000237853 (NFIA-AS1)
NFIA antisense RNA 1 		ENST00000442027 (NFIA-AS1-001) 61248945-61253510 lincRNA
ENST00000596354 (NFIA-AS1-002) 61248994-61253510 lincRNA
ENST00000596404 (NFIA-AS1-003) 61248996-61253510 lincRNA
ENST00000617929 (NFIA-AS1-004) 61248965-61253510 lincRNA
ENSG00000264551 (AC099791.1)
 ENST00000580743 (AC099791.1-201) 61629031-61629121 miRNA
ENSG00000271200 (RP11-430G17.3)
 ENST00000605725 (RP11-430G17.3-001) 61741998-61742424 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008LM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1309 VISTA 10090 4:97807609-98410094
GeneTranscriptPositionBiotype
ENSMUSG00000028563 (Tm2d1)
TM2 domain containing 1 		ENSMUST00000030292 (Tm2d1-002) 98355370-98383246 protein_coding
ENSMUST00000102793 (Tm2d1-001) 98355370-98383306 protein_coding
ENSMUST00000107051 (Tm2d1-003) 98355370-98383060 protein_coding
ENSMUST00000125034 (Tm2d1-005) 98355370-98375028 nonsense_mediated_decay
ENSMUST00000143116 (Tm2d1-004) 98355605-98383232 protein_coding
ENSMUSG00000028565 (Nfia)
nuclear factor I/A 		ENSMUST00000052018 (Nfia-004) 97777819-98118871 protein_coding
ENSMUST00000075448 (Nfia-001) 97777608-98118871 protein_coding
ENSMUST00000092532 (Nfia-201) 97777626-98118874 protein_coding
ENSMUST00000107057 (Nfia-002) 97777834-98118871 protein_coding
ENSMUST00000107062 (Nfia-003) 97777803-98118871 protein_coding
ENSMUST00000133011 (Nfia-006) 97911033-98042595 processed_transcript
ENSMUST00000148930 (Nfia-007) 97880119-98065355 protein_coding
ENSMUST00000152023 (Nfia-005) 97772734-98000466 protein_coding
ENSMUSG00000046683 (0610025J13Rik)
RIKEN cDNA 0610025J13 gene 		ENSMUST00000131324 (0610025J13Rik-002) 98321398-98322850 antisense
ENSMUST00000131516 (0610025J13Rik-001) 98321448-98331791 antisense
ENSMUST00000180374 (0610025J13Rik-201) 98321448-98331791 antisense
ENSMUSG00000081096 (Gm12691)
predicted gene 12691 		ENSMUST00000120186 (Gm12691-001) 98146144-98146599 processed_pseudogene
ENSMUSG00000082144 (Gm12788)
predicted gene 12788 		ENSMUST00000119090 (Gm12788-001) 98352427-98352734 processed_pseudogene
ENSMUSG00000082388 (Gm12692)
predicted gene 12692 		ENSMUST00000121092 (Gm12692-001) 98234745-98235290 processed_pseudogene
ENSMUSG00000093135 (Gm25997)
predicted gene, 25997 		ENSMUST00000175394 (Gm25997-201) 98359194-98359303 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LM_0001ENSG00000162599ENST00000357977ENST00000371184ENST00000371185ENST00000371187ENST00000371189ENST00000371191ENST00000403491ENST00000407417ENST00000476646ENST00000479364ENST00000482020ENST00000485903ENST00000493627ENST00000496712ENSG00000162604ENST00000294613ENST00000371177ENST00000371178ENST00000371180ENST00000468586ENST00000472357ENST00000472989ENST00000488206ENST00000488410ENST00000494926ENST00000496465ENST00000606498ENSG00000223920ENST00000416440ENSG00000237853ENST00000442027ENST00000596354ENST00000596404ENST00000617929ENSG00000264551ENST00000580743ENSG00000271200ENST00000605725CIL_0008LM_0002ENSMUSG00000028563ENSMUST00000030292ENSMUST00000102793ENSMUST00000107051ENSMUST00000125034ENSMUST00000143116ENSMUSG00000028565ENSMUST00000052018ENSMUST00000075448ENSMUST00000092532ENSMUST00000107057ENSMUST00000107062ENSMUST00000133011ENSMUST00000148930ENSMUST00000152023ENSMUSG00000046683ENSMUST00000131324ENSMUST00000131516ENSMUST00000180374ENSMUSG00000081096ENSMUST00000120186ENSMUSG00000082144ENSMUST00000119090ENSMUSG00000082388ENSMUST00000121092ENSMUSG00000093135ENSMUST00000175394
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008LM_0001ENSG00000162599ENST00000357977ENST00000371187ENST00000403491ENST00000485903ENST00000493627ENSG00000162604ENST00000294613ENST00000371177ENST00000468586ENST00000472989ENST00000488206ENST00000488410ENST00000494926ENST00000496465ENST00000606498ENSG00000223920ENST00000416440ENSG00000237853ENST00000442027ENST00000596354ENST00000596404ENST00000617929ENSG00000264551ENST00000580743ENSG00000271200ENST00000605725CIL_0008LM_0002ENSMUSG00000028563ENSMUST00000030292ENSMUST00000102793ENSMUST00000107051ENSMUST00000143116ENSMUSG00000028565ENSMUST00000052018ENSMUST00000075448ENSMUST00000092532ENSMUST00000107057ENSMUST00000107062ENSMUST00000148930ENSMUST00000152023ENSMUSG00000046683ENSMUST00000131324ENSMUST00000131516ENSMUST00000180374ENSMUSG00000081096ENSMUST00000120186ENSMUSG00000082144ENSMUST00000119090ENSMUSG00000082388ENSMUST00000121092ENSMUSG00000093135ENSMUST00000175394
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162599 ENST00000357977 N/A N/A 2.025±0.00 1.524±0.00 4.721±0.00 N/A 2.837±0.00 4.346±0.00 6.737±0.00 2.995±0.00 N/A 2.469±0.00 N/A N/A
ENST00000371184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371187 N/A N/A N/A N/A N/A 5.243±0.00 2.274±0.00 8.734±0.00 9.227±0.00 4.245±0.00 N/A N/A N/A N/A
ENST00000371189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403491 6.647±0.00 5.506±0.00 1.804±0.00 4.603±3.33 4.968±0.50 6.136±0.36 6.285±3.10 5.983±2.42 8.302±4.80 3.051±1.18 2.247±1.18 5.790±4.25 0.705±0.42 4.453±2.64
ENST00000407417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.105±0.00 N/A N/A N/A
ENST00000493627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.272±0.00 N/A N/A
ENST00000496712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162604 ENST00000294613 1.010±0.00 7.752±0.00 1.699±0.00 8.507±2.76 7.969±0.00 5.614±0.00 4.113±1.17 5.814±2.01 2.931±0.03 7.194±0.36 2.882±0.00 8.940±1.52 9.326±0.67 7.660±3.34
ENST00000371177 0.331±0.00 2.191±0.00 N/A N/A 1.209±0.00 1.388±0.00 0.644±0.00 0.578±0.00 N/A N/A 0.090±0.00 1.113±0.08 N/A 1.196±0.00
ENST00000371178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468586 N/A N/A N/A N/A N/A N/A N/A 1.972±0.00 3.692±0.00 N/A N/A N/A 6.235±0.00 N/A
ENST00000472357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472989 N/A N/A 2.588±0.00 13.937±0.00 4.468±0.00 2.094±0.00 N/A N/A 8.277±0.00 N/A 3.216±0.00 N/A N/A N/A
ENST00000488206 N/A N/A N/A 5.041±0.00 N/A 2.495±0.00 3.158±0.00 N/A N/A N/A 3.855±0.00 11.924±0.00 N/A 5.410±0.00
ENST00000488410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.171±0.00 N/A N/A N/A
ENST00000494926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.488±0.00
ENST00000496465 N/A N/A N/A 18.454±0.00 N/A N/A 8.742±0.00 N/A N/A N/A N/A N/A 7.406±0.00 N/A
ENST00000606498 2.033±0.00 N/A N/A 6.548±0.00 N/A 2.359±0.00 N/A 5.122±0.00 1.829±0.00 N/A 1.041±0.00 7.044±0.00 5.760±0.00 7.675±1.31
ENSG00000223920 ENST00000416440 N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A 0.503±0.00 N/A N/A 0.151±0.00 N/A N/A
ENSG00000237853 ENST00000442027 N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.451±1.10
ENST00000596354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00
ENST00000596404 N/A 0.023±0.00 N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617929 0.101±0.00 0.150±0.00 N/A 0.134±0.00 N/A N/A 0.171±0.00 N/A N/A N/A N/A 0.187±0.00 N/A 4.195±0.00
ENSG00000264551 ENST00000580743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.249±0.00
ENSG00000271200 ENST00000605725 0.068±0.00 0.140±0.00 N/A 0.774±0.00 0.304±0.00 N/A 1.138±0.00 0.996±0.00 0.137±0.00 0.776±0.00 0.507±0.25 0.720±0.57 0.286±0.00 0.393±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028563 ENSMUST00000030292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.877±0.00
ENSMUST00000102793 13.566±1.49 50.511±38.72 20.318±3.91 17.488±11.48 8.560±2.30 7.903±6.71 14.519±0.19 22.379±5.67 11.860±3.01 17.700±6.72 18.203±1.19 16.810±13.57 12.998±9.82 5.661±2.75
ENSMUST00000107051 N/A N/A N/A 4.494±0.00 N/A N/A N/A N/A N/A N/A N/A 7.624±2.73 3.700±1.00 N/A
ENSMUST00000125034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143116 17.344±0.00 N/A N/A 11.932±0.00 4.716±1.04 N/A N/A 10.160±0.60 5.373±2.88 6.912±0.00 N/A 13.815±3.16 13.970±4.24 2.008±0.02
ENSMUSG00000028565 ENSMUST00000052018 2.826±0.00 5.789±2.33 N/A 0.574±0.00 N/A N/A N/A N/A 1.863±1.24 N/A 0.506±0.30 4.417±1.35 0.116±0.07 N/A
ENSMUST00000075448 6.633±0.98 9.152±3.26 4.953±0.89 10.463±0.22 7.367±1.39 4.063±0.67 4.546±0.86 5.563±0.37 3.019±2.16 6.899±1.00 0.794±0.33 6.601±2.86 0.619±0.52 0.811±0.39
ENSMUST00000092532 2.219±0.00 N/A N/A 1.600±0.00 1.874±0.36 0.776±0.00 1.140±0.23 N/A 0.740±0.51 1.250±0.00 0.254±0.00 1.818±0.62 0.255±0.00 0.191±0.01
ENSMUST00000107057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.07 0.743±0.00 N/A N/A
ENSMUST00000107062 2.271±0.30 2.936±0.21 2.080±0.52 N/A 2.087±0.86 1.279±0.22 1.700±0.40 1.274±0.40 0.800±0.56 2.271±0.32 0.634±0.28 3.407±0.93 0.177±0.00 0.225±0.04
ENSMUST00000133011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148930 26.915±4.53 20.759±2.94 N/A N/A 25.736±4.32 10.645±2.05 18.349±1.70 13.720±3.82 7.453±4.44 18.518±1.43 N/A 30.983±11.73 N/A 2.508±0.55
ENSMUST00000152023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.531±0.00 N/A
ENSMUSG00000046683 ENSMUST00000131324 0.329±0.08 0.270±0.09 0.080±0.01 0.250±0.00 0.426±0.19 N/A 0.523±0.05 0.795±0.24 0.066±0.05 0.253±0.06 0.262±0.21 0.588±0.36 0.234±0.20 0.143±0.03
ENSMUST00000131516 0.104±0.05 0.132±0.06 0.022±0.01 N/A 0.170±0.00 N/A 0.370±0.16 0.252±0.09 0.057±0.00 0.135±0.02 0.245±0.09 0.241±0.04 0.268±0.09 0.184±0.03
ENSMUST00000180374 N/A N/A N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081096 ENSMUST00000120186 N/A N/A N/A 0.198±0.13 N/A N/A 0.179±0.05 0.117±0.00 0.167±0.11 N/A N/A 0.157±0.05 0.306±0.00 N/A
ENSMUSG00000082144 ENSMUST00000119090 0.343±0.10 0.602±0.20 1.080±0.18 0.612±0.00 0.761±0.32 0.455±0.00 0.435±0.01 0.276±0.07 0.240±0.08 0.593±0.29 0.260±0.05 0.973±0.20 0.461±0.00 N/A
ENSMUSG00000082388 ENSMUST00000121092 N/A N/A N/A 0.042±0.01 N/A 0.126±0.00 0.092±0.02 N/A N/A 0.081±0.00 N/A 0.346±0.29 0.104±0.04 N/A
ENSMUSG00000093135 ENSMUST00000175394 N/A N/A N/A N/A 1664.250±0.00 N/A N/A N/A N/A 1042.630±0.00 25.180±0.00 16.164±0.00 N/A N/A

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