C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: raftlin family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162944 RFTN2 9606 - 2:197568224-197676045 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295049 RFTN2-001 197568224-197675995 protein_coding
  ENST00000429081 RFTN2-004 197644247-197676045 protein_coding
  ENST00000454447 RFTN2-002 197572006-197617895 protein_coding
  ENST00000494346 RFTN2-005 197571735-197618021 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295049ENST00000454447ENST00000494346
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295049 0.520±0.00 0.301±0.00 0.231±0.00 2.943±1.17 0.470±0.00 0.438±0.19 0.465±0.14 0.457±0.00 0.446±0.39 0.563±0.27 0.072±0.06 0.962±0.12 0.270±0.12 0.542±0.01
ENST00000454447 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.00 0.987±0.65 N/A N/A 4.090±0.00
ENST00000494346 N/A N/A 0.282±0.00 5.870±0.13 1.706±0.00 N/A 1.122±0.00 N/A 1.481±0.00 1.306±0.00 0.244±0.00 1.847±0.15 2.223±1.29 4.335±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368
CIL_00042C CIL_00042C_0002 CGP 2:197515571-197676045
CIL_0002KG CIL_0002KG_0001 CGP 2:197568224-197708387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0033227 IEA dsRNA transport
GO:0043330 IEA response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056078 rftn2 raftlin family member 2 protein_coding Danio_rerio
ENSMUSG00000025978 Rftn2 raftlin family member 2 protein_coding Mus_musculus

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