C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002KG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162944-ENSG00000247626 CGP 9606 2:197568224-197708387
GeneTranscriptPositionBiotype
ENSG00000162944 (RFTN2)
raftlin family member 2 		ENST00000295049 (RFTN2-001) 197568224-197675995 protein_coding
ENST00000429081 (RFTN2-004) 197644247-197676045 protein_coding
ENST00000454447 (RFTN2-002) 197572006-197617895 protein_coding
ENST00000494346 (RFTN2-005) 197571735-197618021 retained_intron
ENSG00000222017 (AC011997.1)
 ENST00000409845 (AC011997.1-001) 197693106-197774823 antisense
ENSG00000247626 (MARS2)
methionyl-tRNA synthetase 2, mitochondrial 		ENST00000282276 (MARS2-001) 197705369-197708387 protein_coding
CIL_0002KG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025978-ENSMUSG00000046994 CGP 10090 1:55170159-55248470
GeneTranscriptPositionBiotype
ENSMUSG00000025978 (Rftn2)
raftlin family member 2 		ENSMUST00000027121 (Rftn2-001) 55170159-55226782 protein_coding
ENSMUST00000114428 (Rftn2-004) 55201651-55226782 protein_coding
ENSMUST00000132055 (Rftn2-002) 55171748-55226782 nonsense_mediated_decay
ENSMUST00000133294 (Rftn2-005) 55203945-55206489 processed_transcript
ENSMUST00000141107 (Rftn2-003) 55223942-55226782 processed_transcript
ENSMUSG00000046994 (Mars2)
methionine-tRNA synthetase 2 (mitochondrial) 		ENSMUST00000061334 (Mars2-001) 55237177-55248470 protein_coding
ENSMUSG00000097649 (Gm10561)
predicted gene 10561 		ENSMUST00000181563 (Gm10561-001) 55226251-55235622 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002KG_0001ENSG00000162944ENST00000295049ENST00000429081ENST00000454447ENST00000494346ENSG00000222017ENST00000409845ENSG00000247626ENST00000282276CIL_0002KG_0002ENSMUSG00000025978ENSMUST00000027121ENSMUST00000114428ENSMUST00000132055ENSMUST00000133294ENSMUST00000141107ENSMUSG00000046994ENSMUST00000061334ENSMUSG00000097649ENSMUST00000181563
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002KG_0001ENSG00000162944ENST00000295049ENST00000454447ENST00000494346ENSG00000222017ENST00000409845ENSG00000247626ENST00000282276CIL_0002KG_0002ENSMUSG00000025978ENSMUST00000027121ENSMUST00000114428ENSMUST00000132055ENSMUST00000133294ENSMUSG00000046994ENSMUST00000061334ENSMUSG00000097649ENSMUST00000181563
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162944 ENST00000295049 0.520±0.00 0.301±0.00 0.231±0.00 2.943±1.17 0.470±0.00 0.438±0.19 0.465±0.14 0.457±0.00 0.446±0.39 0.563±0.27 0.072±0.06 0.962±0.12 0.270±0.12 0.542±0.01
ENST00000429081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454447 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.00 0.987±0.65 N/A N/A 4.090±0.00
ENST00000494346 N/A N/A 0.282±0.00 5.870±0.13 1.706±0.00 N/A 1.122±0.00 N/A 1.481±0.00 1.306±0.00 0.244±0.00 1.847±0.15 2.223±1.29 4.335±1.40
ENSG00000222017 ENST00000409845 N/A N/A N/A 0.027±0.00 N/A N/A 0.008±0.00 N/A 0.047±0.00 0.014±0.00 N/A 0.248±0.00 0.051±0.01 N/A
ENSG00000247626 ENST00000282276 0.474±0.00 1.868±0.00 0.273±0.00 1.309±0.04 1.335±0.10 1.162±0.55 1.015±0.25 2.266±0.80 1.446±0.70 0.612±0.26 1.126±0.55 2.597±0.84 1.087±0.35 0.978±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025978 ENSMUST00000027121 1.925±0.75 2.208±0.00 3.012±1.26 3.023±0.71 1.379±0.00 1.290±0.48 0.586±0.04 0.903±0.20 0.172±0.06 1.015±0.17 0.317±0.09 2.386±0.68 0.395±0.19 1.261±0.00
ENSMUST00000114428 N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132055 N/A N/A N/A 9.748±0.00 N/A N/A N/A N/A N/A N/A N/A 5.941±0.00 0.474±0.06 2.696±1.47
ENSMUST00000133294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 4.351±0.00
ENSMUST00000141107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046994 ENSMUST00000061334 1.717±0.77 10.226±1.16 0.806±0.12 0.706±0.38 3.161±1.75 4.307±0.51 1.447±0.12 1.646±0.44 1.300±0.61 2.076±0.35 0.587±0.06 4.018±2.04 0.605±0.39 3.275±0.17
ENSMUSG00000097649 ENSMUST00000181563 0.871±0.03 3.068±0.40 1.439±0.17 1.350±0.06 0.756±0.16 1.124±0.27 0.668±0.12 0.307±0.00 0.114±0.04 N/A 0.139±0.05 1.062±0.12 0.253±0.06 N/A

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