C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00042C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056085-ENSDARG00000056078 CGP 7955 9:33340170-33376981
GeneTranscriptPositionBiotype
ENSDARG00000056078 (rftn2)
raftlin family member 2 		ENSDART00000078499 (rftn2-001) 33346228-33376981 protein_coding
ENSDART00000136587 (rftn2-002) 33349447-33350143 retained_intron
ENSDARG00000056085 (mob4)
MOB family member 4, phocein 		ENSDART00000078513 (mob4-001) 33340170-33346170 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00042C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115540-ENSG00000162944 CGP 9606 2:197515571-197676045
GeneTranscriptPositionBiotype
ENSG00000144381 (HSPD1)
heat shock 60kDa protein 1 (chaperonin) 		ENST00000345042 (HSPD1-201) 197486586-197500274 protein_coding
ENST00000388968 (HSPD1-001) 197486581-197500047 protein_coding
ENST00000418022 (HSPD1-012) 197498674-197499840 protein_coding
ENST00000426480 (HSPD1-009) 197497168-197516737 protein_coding
ENST00000428204 (HSPD1-010) 197497285-197499866 protein_coding
ENST00000430176 (HSPD1-013) 197494148-197500208 protein_coding
ENST00000439605 (HSPD1-011) 197497317-197499835 protein_coding
ENST00000440114 (HSPD1-007) 197494640-197499822 nonsense_mediated_decay
ENST00000452200 (HSPD1-006) 197494194-197500221 protein_coding
ENST00000461097 (HSPD1-014) 197496891-197499817 retained_intron
ENST00000476746 (HSPD1-008) 197495051-197499879 retained_intron
ENST00000482167 (HSPD1-004) 197493320-197494474 retained_intron
ENST00000486181 (HSPD1-005) 197494150-197497507 retained_intron
ENST00000491249 (HSPD1-003) 197487974-197490572 retained_intron
ENSG00000162944 (RFTN2)
raftlin family member 2 		ENST00000295049 (RFTN2-001) 197568224-197675995 protein_coding
ENST00000429081 (RFTN2-004) 197644247-197676045 protein_coding
ENST00000454447 (RFTN2-002) 197572006-197617895 protein_coding
ENST00000494346 (RFTN2-005) 197571735-197618021 retained_intron
ENSG00000231699 (AC020550.7)
 ENST00000447385 (AC020550.7-001) 197533803-197533965 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00042C_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025979-ENSMUSG00000025978 CGP 10090 1:55131231-55226782
GeneTranscriptPositionBiotype
ENSMUSG00000025978 (Rftn2)
raftlin family member 2 		ENSMUST00000027121 (Rftn2-001) 55170159-55226782 protein_coding
ENSMUST00000114428 (Rftn2-004) 55201651-55226782 protein_coding
ENSMUST00000132055 (Rftn2-002) 55171748-55226782 nonsense_mediated_decay
ENSMUST00000133294 (Rftn2-005) 55203945-55206489 processed_transcript
ENSMUST00000141107 (Rftn2-003) 55223942-55226782 processed_transcript
ENSMUSG00000025979 (Mob4)
MOB family member 4, phocein 		ENSMUST00000027122 (Mob4-006) 55131282-55152999 protein_coding
ENSMUST00000159311 (Mob4-003) 55131231-55153938 protein_coding
ENSMUST00000159743 (Mob4-007) 55131326-55145383 retained_intron
ENSMUST00000161122 (Mob4-004) 55131287-55153359 nonsense_mediated_decay
ENSMUST00000162364 (Mob4-001) 55131231-55154899 protein_coding
ENSMUST00000162553 (Mob4-005) 55131320-55152783 protein_coding
ENSMUST00000162930 (Mob4-002) 55131260-55154898 retained_intron
ENSMUST00000187422 (Mob4-008) 55147630-55148517 retained_intron
ENSMUSG00000061863 (Gm6822)
predicted pseudogene 6822 		ENSMUST00000161440 (Gm6822-001) 55160747-55161053 processed_pseudogene
ENSMUSG00000097649 (Gm10561)
predicted gene 10561 		ENSMUST00000181563 (Gm10561-001) 55226251-55235622 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042C_0001ENSDARG00000056078ENSDART00000078499ENSDART00000136587ENSDARG00000056085ENSDART00000078513CIL_00042C_0002ENSG00000144381ENST00000345042ENST00000388968ENST00000418022ENST00000426480ENST00000428204ENST00000430176ENST00000439605ENST00000440114ENST00000452200ENST00000461097ENST00000476746ENST00000482167ENST00000486181ENST00000491249ENSG00000162944ENST00000295049ENST00000429081ENST00000454447ENST00000494346ENSG00000231699ENST00000447385CIL_00042C_0003ENSMUSG00000025978ENSMUST00000027121ENSMUST00000114428ENSMUST00000132055ENSMUST00000133294ENSMUST00000141107ENSMUSG00000025979ENSMUST00000027122ENSMUST00000159311ENSMUST00000159743ENSMUST00000161122ENSMUST00000162364ENSMUST00000162553ENSMUST00000162930ENSMUST00000187422ENSMUSG00000061863ENSMUST00000161440ENSMUSG00000097649ENSMUST00000181563
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042C_0001ENSDARG00000056078ENSDART00000078499ENSDARG00000056085ENSDART00000078513CIL_00042C_0002ENSG00000144381ENST00000345042ENST00000388968ENSG00000162944ENST00000295049ENST00000454447ENST00000494346ENSG00000231699ENST00000447385CIL_00042C_0003ENSMUSG00000025978ENSMUST00000027121ENSMUST00000114428ENSMUST00000132055ENSMUST00000133294ENSMUSG00000025979ENSMUST00000027122ENSMUST00000159311ENSMUST00000162364ENSMUST00000162553ENSMUST00000162930ENSMUSG00000061863ENSMUST00000161440ENSMUSG00000097649ENSMUST00000181563
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056078 ENSDART00000078499 N/A N/A N/A 6.708±2.72 N/A N/A 1.810±0.60 2.983±0.91 0.152±0.00 N/A 2.101±0.00 N/A N/A N/A
ENSDART00000136587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056085 ENSDART00000078513 N/A N/A N/A 48.300±27.32 N/A N/A 29.590±28.94 20.936±15.89 4.814±0.00 N/A 39.454±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144381 ENST00000345042 N/A 14.459±0.00 8.827±0.00 N/A N/A N/A N/A 19.470±4.17 N/A N/A 1.316±0.00 32.405±12.49 39.871±22.45 22.333±2.04
ENST00000388968 42.857±0.00 22.990±0.00 10.981±0.00 20.737±9.46 30.253±15.37 67.372±47.34 12.188±8.84 52.562±28.37 62.740±51.62 36.228±25.32 24.364±0.00 98.270±77.55 36.872±5.22 22.618±8.96
ENST00000418022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162944 ENST00000295049 0.520±0.00 0.301±0.00 0.231±0.00 2.943±1.17 0.470±0.00 0.438±0.19 0.465±0.14 0.457±0.00 0.446±0.39 0.563±0.27 0.072±0.06 0.962±0.12 0.270±0.12 0.542±0.01
ENST00000429081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454447 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.00 0.987±0.65 N/A N/A 4.090±0.00
ENST00000494346 N/A N/A 0.282±0.00 5.870±0.13 1.706±0.00 N/A 1.122±0.00 N/A 1.481±0.00 1.306±0.00 0.244±0.00 1.847±0.15 2.223±1.29 4.335±1.40
ENSG00000231699 ENST00000447385 N/A N/A N/A N/A N/A 1.042±0.32 N/A N/A N/A 3.667±0.00 N/A 1.087±0.00 1.135±0.00 0.270±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025978 ENSMUST00000027121 1.925±0.75 2.208±0.00 3.012±1.26 3.023±0.71 1.379±0.00 1.290±0.48 0.586±0.04 0.903±0.20 0.172±0.06 1.015±0.17 0.317±0.09 2.386±0.68 0.395±0.19 1.261±0.00
ENSMUST00000114428 N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132055 N/A N/A N/A 9.748±0.00 N/A N/A N/A N/A N/A N/A N/A 5.941±0.00 0.474±0.06 2.696±1.47
ENSMUST00000133294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 4.351±0.00
ENSMUST00000141107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025979 ENSMUST00000027122 N/A N/A N/A 28.290±0.00 N/A N/A N/A N/A N/A N/A N/A 25.926±12.03 32.190±17.44 2.044±0.00
ENSMUST00000159311 3.945±0.00 N/A N/A N/A 4.138±1.87 N/A N/A N/A N/A N/A N/A 3.162±0.64 2.566±0.16 N/A
ENSMUST00000159743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162364 9.747±1.93 32.781±4.87 23.945±2.41 16.309±9.93 7.878±0.83 10.977±1.68 7.139±0.33 11.024±1.31 9.285±2.05 12.581±0.40 10.344±0.46 9.790±2.60 9.101±6.87 2.792±0.39
ENSMUST00000162553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.817±2.94 N/A
ENSMUST00000162930 N/A N/A N/A N/A 0.976±0.00 1.414±0.00 N/A N/A 0.675±0.00 N/A N/A 2.080±0.32 N/A 0.212±0.13
ENSMUST00000187422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061863 ENSMUST00000161440 N/A 0.285±0.00 0.265±0.11 0.304±0.02 N/A 0.375±0.00 0.217±0.01 0.213±0.00 0.479±0.23 0.279±0.01 0.261±0.00 0.519±0.02 0.277±0.14 0.501±0.25
ENSMUSG00000097649 ENSMUST00000181563 0.871±0.03 3.068±0.40 1.439±0.17 1.350±0.06 0.756±0.16 1.124±0.27 0.668±0.12 0.307±0.00 0.114±0.04 N/A 0.139±0.05 1.062±0.12 0.253±0.06 N/A

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