C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: raftlin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295049 RFTN2-001 ENSG00000162944 9606 - 2:197568224-197675995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295049 0.520±0.00 0.301±0.00 0.231±0.00 2.943±1.17 0.470±0.00 0.438±0.19 0.465±0.14 0.457±0.00 0.446±0.39 0.563±0.27 0.072±0.06 0.962±0.12 0.270±0.12 0.542±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368
CIL_00042C CIL_00042C_0002 CGP 2:197515571-197676045
CIL_0002KG CIL_0002KG_0001 CGP 2:197568224-197708387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0033227 IEA dsRNA transport
GO:0043330 IEA response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027121 Rftn2-001 protein_coding Mus_musculus 0 1421
ENSMUST00000114428 Rftn2-004 protein_coding Mus_musculus 0 787
ENSMUST00000132055 Rftn2-002 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000141107 Rftn2-003 processed_transcript Mus_musculus 0 311

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